Basic Information
Locus ID:
nbisL1-mrna-2848
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
Homocysteine s-methyltransferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 002177F_pilon | 5772232 | 5774960 | + | nbisL1-mrna-2848 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.16 | 36,525.19 Da | 42.91 | 95.48 | -0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02574 | Homocysteine S-methyltransferase | 23 | 323 | 4.0E-73 | IPR003726 |
| SUPERFAMILY | SSF82282 | Homocysteine S-methyltransferase | 18 | 327 | 8.37E-80 | IPR036589 |
| Gene3D | G3DSA:3.20.20.330 | - | 11 | 323 | 2.7E-96 | IPR036589 |
| PIRSF | PIRSF037505 | BHMT | 281 | 330 | 0.61 | IPR017226 |
| PIRSF | PIRSF037505 | BHMT | 6 | 251 | 1.7E-7 | IPR017226 |
| ProSiteProfiles | PS50970 | Homocysteine-binding domain profile. | 10 | 324 | 48.347885 | IPR003726 |
Gene Ontology
Biological Process:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G25900.1 | Homocysteine S-methyltransferase family protein. | 0 |
| RefSeq | XP_021637890.1 | homocysteine S-methyltransferase 1-like [Hevea brasiliensis] | 0 |
| A4ZGQ8 | Homocysteine S-methyltransferase 1 OS=Brassica oleracea var. italica OX=36774 GN=HMT1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2MX87 | Uncharacterized protein MANES_14G102300 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology