Basic Information
Locus ID:
nbisL1-mrna-2842
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
Ubiquitin receptor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 002177F_pilon | 5722852 | 5727745 | - | nbisL1-mrna-2842 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.57 | 37,446.85 Da | 50.75 | 81.85 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01805 | Ubl_Rad23 | 1 | 74 | 1.05511E-32 | - |
| Pfam | PF00240 | Ubiquitin family | 3 | 76 | 4.6E-20 | IPR000626 |
| Pfam | PF09280 | XPC-binding domain | 274 | 329 | 1.8E-22 | IPR015360 |
| Pfam | PF00627 | UBA/TS-N domain | 171 | 206 | 1.9E-13 | IPR015940 |
| SUPERFAMILY | SSF101238 | XPC-binding domain | 270 | 336 | 1.15E-22 | IPR036353 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 79 | 2.48E-23 | IPR029071 |
| SUPERFAMILY | SSF46934 | UBA-like | 155 | 212 | 1.63E-11 | IPR009060 |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 80 | 2.2E-28 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 161 | 211 | 8.9E-21 | - |
| Gene3D | G3DSA:1.10.10.540 | - | 264 | 330 | 6.5E-28 | IPR036353 |
| SMART | SM00727 | CBM | 272 | 315 | 3.9E-6 | IPR006636 |
| SMART | SM00213 | ubq_7 | 1 | 75 | 6.0E-22 | IPR000626 |
| SMART | SM00165 | uba_6 | 168 | 208 | 1.5E-4 | IPR015940 |
| TIGRFAM | TIGR00601 | rad23: UV excision repair protein Rad23 | 1 | 337 | 1.2E-88 | IPR004806 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 166 | 209 | 12.16134 | IPR015940 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 79 | 20.827379 | IPR000626 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 228 | 247 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 225 | 247 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 81 | 107 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G02540.1 | Rad23 UV excision repair protein family. Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome. | 0 |
| RefSeq | XP_021637897.1 | ubiquitin receptor RAD23c-like [Hevea brasiliensis] | 0 |
| Q84L31 | Ubiquitin receptor RAD23c OS=Arabidopsis thaliana OX=3702 GN=RAD23C PE=1 SV=2 | 0 | |
| TrEMBL | A0A2P2MDW7 | Ubiquitin receptor RAD23 OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology