Basic Information
Locus ID:
nbisL1-mrna-28416
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
ABC transporter C family member
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 35317665 | 35324296 | - | nbisL1-mrna-28416 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.56 | 168,796.80 Da | 40.49 | 106.97 | 0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03250 | ABCC_MRP_domain1 | 628 | 828 | 6.46017E-88 | - |
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 314 | 602 | 1.18667E-85 | IPR044746 |
| CDD | cd03244 | ABCC_MRP_domain2 | 1255 | 1475 | 1.07032E-121 | - |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 938 | 1232 | 1.57275E-86 | IPR044726 |
| Pfam | PF00664 | ABC transporter transmembrane region | 314 | 581 | 2.6E-29 | IPR011527 |
| Pfam | PF00664 | ABC transporter transmembrane region | 957 | 1184 | 3.3E-28 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 648 | 780 | 6.4E-18 | IPR003439 |
| Pfam | PF00005 | ABC transporter | 1275 | 1422 | 5.0E-28 | IPR003439 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 621 | 843 | 5.22E-55 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1249 | 1487 | 1.07E-66 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 302 | 608 | 4.05E-36 | IPR036640 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 940 | 1239 | 1.28E-46 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 1240 | 1493 | 6.0E-78 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 906 | 1238 | 2.2E-51 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 281 | 611 | 4.2E-50 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 623 | 854 | 1.6E-66 | IPR027417 |
| SMART | SM00382 | AAA_5 | 1283 | 1475 | 1.1E-13 | IPR003593 |
| SMART | SM00382 | AAA_5 | 655 | 828 | 2.1E-10 | IPR003593 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 940 | 1220 | 33.757454 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1259 | 1491 | 16.42671 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 313 | 594 | 36.058151 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 628 | 851 | 21.828844 | IPR003439 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 753 | 767 | - | IPR017871 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 862 | 897 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G60160.1 | multidrug resistance-associated protein 9. member of MRP subfamily | 0 |
| RefSeq | XP_021659378.1 | putative ABC transporter C family member 15 isoform X1 [Hevea brasiliensis] | 0 |
| Q9M1C7 | ABC transporter C family member 9 OS=Arabidopsis thaliana OX=3702 GN=ABCC9 PE=2 SV=2 | 0 | |
| TrEMBL | A0A2P2JCN5 | ABC-type xenobiotic transporter OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology