Basic Information
Locus ID:
nbisL1-mrna-2803
Species & Taxonomic ID:
Hibiscus hamabo Siebold & Zucc. & 1841
Description:
U-box domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 26160052 | 26162846 | + | nbisL1-mrna-2803 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.32 | 29,480.04 Da | 68.31 | 92.07 | -0.68 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 141 | 243 | 3.8E-11 | IPR001245 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 116 | 244 | 8.59E-22 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 110 | 247 | 9.8E-27 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 135 | 251 | 9.3334 | IPR000719 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 27 | - | - |
| Coils | Coil | Coil | 76 | 110 | - | - |
| Coils | Coil | Coil | 16 | 71 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G45910.1 | U-box domain-containing protein kinase family protein. | 0 |
| RefSeq | XP_039047995.1 | U-box domain-containing protein 33-like isoform X3 [Hibiscus syriacus] | 0 |
| Q8GUH1 | U-box domain-containing protein 33 OS=Arabidopsis thaliana OX=3702 GN=PUB33 PE=2 SV=2 | 0 | |
| TrEMBL | A0A6A2WL36 | U-box domain-containing protein 33, putative isoform 2 OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00116951pilonHSYRG00226 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Casuarinaceae | Casuarina equisetifolia | 5 | Ceq04G0093, Ceq05G0389, Ceq05G0391, Ceq05G0392, Ceq05G0402 |
| Casuarinaceae | Casuarina glauca | 6 | Cgl04G0111, Cgl04G0118, Cgl04G0132, Cgl04G0141, Cgl05G0404 ... |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-2803 |