Basic Information
Locus ID:
nbisL1-mrna-28
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
Glycosyl hydrolases family 28
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 001172F_pilon | 169878 | 172210 | + | nbisL1-mrna-28 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.01 | 45,514.54 Da | 45.23 | 82.92 | -0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00295 | Glycosyl hydrolases family 28 | 104 | 209 | 6.8E-7 | IPR000743 |
| Pfam | PF00295 | Glycosyl hydrolases family 28 | 227 | 374 | 2.2E-50 | IPR000743 |
| SUPERFAMILY | SSF51126 | Pectin lyase-like | 71 | 412 | 5.13E-90 | IPR011050 |
| Gene3D | G3DSA:2.160.20.10 | - | 222 | 403 | 3.6E-58 | IPR012334 |
| Gene3D | G3DSA:2.160.20.10 | - | 79 | 221 | 1.4E-23 | IPR012334 |
| ProSitePatterns | PS00502 | Polygalacturonase active site. | 244 | 257 | - | IPR000743 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G56710.1 | Pectin lyase-like superfamily protein. | 0 |
| RefSeq | XP_002307031.4 | polygalacturonase At1g48100 [Populus trichocarpa] | 0 |
| Q949Z1 | Polygalacturonase At1g48100 OS=Arabidopsis thaliana OX=3702 GN=At1g48100 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2K2A9T7 | Polygalacturonase OS=Populus trichocarpa OX=3694 GN=POPTR_005G005500 PE=3 SV=2 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology