Basic Information
Locus ID:
nbisL1-mrna-27914
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
Belongs to the WD repeat SEC13 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 29460950 | 29462337 | - | nbisL1-mrna-27914 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.89 | 14,505.82 Da | 45.63 | 90.62 | 0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 24 | 92 | 5.7E-5 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 7 | 112 | 1.2E-8 | IPR015943 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G30050.1 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_021905330.1 | protein transport protein SEC13 homolog B, partial [Carica papaya] | 0 |
| O64740 | Protein transport protein SEC13 homolog B OS=Arabidopsis thaliana OX=3702 GN=SEC13B PE=1 SV=1 | 0 | |
| TrEMBL | D3Y228 | Sec13-like protein (Fragment) OS=Tachigali melinonii OX=715204 GN=Sec PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg30498 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00011023 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-27914 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-10431 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-7800, nbisL1-mrna-7899 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-23179 |