Basic Information
Locus ID:
nbisL1-mrna-27850
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
F-box kelch-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 28868238 | 28869582 | + | nbisL1-mrna-27850 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.07 | 38,933.60 Da | 36.40 | 74.35 | -0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07646 | Kelch motif | 206 | 249 | 3.5E-5 | IPR011498 |
| Pfam | PF13964 | Kelch motif | 106 | 154 | 8.4E-10 | - |
| Pfam | PF01344 | Kelch motif | 168 | 201 | 3.9E-9 | IPR006652 |
| SUPERFAMILY | SSF117281 | Kelch motif | 79 | 336 | 1.96E-45 | IPR015915 |
| SUPERFAMILY | SSF81383 | F-box domain | 3 | 49 | 2.88E-6 | IPR036047 |
| Gene3D | G3DSA:2.120.10.80 | - | 27 | 349 | 3.6E-44 | IPR015915 |
| SMART | SM00612 | kelc_smart | 117 | 166 | 0.011 | IPR006652 |
| SMART | SM00612 | kelc_smart | 168 | 215 | 3.5E-9 | IPR006652 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G15670.1 | Galactose oxidase/kelch repeat superfamily protein. | 0 |
| RefSeq | XP_021665325.1 | F-box/kelch-repeat protein At1g80440-like [Hevea brasiliensis] | 0 |
| Q9LMR5 | F-box/kelch-repeat protein At1g15670 OS=Arabidopsis thaliana OX=3702 GN=At1g15670 PE=2 SV=1 | 0 | |
| TrEMBL | B9RUU9 | F-box/kelch-repeat protein At1g80440-like OS=Ricinus communis OX=3988 GN=RCOM_0894530 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology