Basic Information
Locus ID:
nbisL1-mrna-27740
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 27416169 | 27417517 | + | nbisL1-mrna-27740 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.05 | 23,135.48 Da | 40.02 | 83.99 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_019163493.1 | - | 0 |
| TrEMBL | A0A834Y9T7 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg9317 |
| Aizoaceae | Mesembryanthemum crystallinum | 32 | gene_11432, gene_12899, gene_16124, gene_16294, gene_17039 ... |
| Amaranthaceae | Atriplex hortensis | 6 | Ah009392, Ah018492, Ah018497, Ah018498, Ah035583, Ah035814 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_8g192230 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg55775, Sbi_jg55776 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg26284, Seu_jg26285 |
| Amaranthaceae | Suaeda aralocaspica | 4 | GOSA_00017849, GOSA_00017850, GOSA_00022226, GOSA_00022227 |
| Amaranthaceae | Suaeda glauca | 5 | Sgl01211, Sgl06296, Sgl06297, Sgl43382, Sgl48185 |
| Amaranthaceae | Chenopodium album | 7 | gene:ENSEOMG00000000754, gene:ENSEOMG00000003575 ... |
| Amaranthaceae | Chenopodium quinoa | 6 | CQ.Regalona.r1.3AG0006140, CQ.Regalona.r1.3AG0006160 ... |
| Apiaceae | Apium graveolens | 1 | Ag3G00815 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_01.443.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri13G27858, Ftri18G32677 |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G2689 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G2822 |
| Nitrariaceae | Nitraria sibirica | 4 | evm.TU.LG02.136, evm.TU.LG04.1772, evm.TU.LG04.1773 ... |
| Plantaginaceae | Plantago ovata | 1 | Pov_00027119 |
| Portulacaceae | Portulaca oleracea | 9 | evm.TU.LG02.1381, evm.TU.LG04.894, evm.TU.LG04.895 ... |
| Rhizophoraceae | Bruguiera sexangula | 6 | evm.TU.31081.1, evm.TU.Scaffold_18_RagTag.639 ... |
| Rhizophoraceae | Carallia pectinifolia | 24 | nbisL1-mrna-17670, nbisL1-mrna-19273, nbisL1-mrna-20346 ... |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-15588, nbisL1-mrna-19249 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-11465, nbisL1-mrna-13714 |
| Rhizophoraceae | Kandelia candel | 3 | add.evm.TU.utg000009l.26, add.evm.TU.utg000012l.40 ... |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00005027 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-19727, nbisL1-mrna-19901 |
| Rhizophoraceae | Rhizophora mangle | 4 | nbisL1-mrna-136, nbisL1-mrna-14828, nbisL1-mrna-22879 ... |
| Salicaceae | Populus euphratica | 4 | populus_peu18487, populus_peu18522, populus_peu36623 ... |
| Solanaceae | Lycium barbarum | 5 | gene-LOC132599988, gene-LOC132606524, gene-LOC132624588 ... |
| Solanaceae | Solanum chilense | 1 | SOLCI002997200 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107032338 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.19857_chr07_+, STRG.6052_chr04_- |
| Tamaricaceae | Tamarix chinensis | 2 | TC06G2719, TC08G0531 |