Basic Information
Locus ID:
nbisL1-mrna-27697
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
LRR-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 27059912 | 27061992 | + | nbisL1-mrna-27697 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.78 | 56,171.64 Da | 48.06 | 93.31 | -0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 6 | 41 | 3.2E-8 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 3 | 77 | 5.49E-13 | IPR036047 |
| SUPERFAMILY | SSF52047 | RNI-like | 69 | 386 | 4.32E-10 | - |
| Gene3D | G3DSA:1.20.1280.50 | - | 1 | 43 | 2.2E-9 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 54 | 275 | 3.9E-8 | IPR032675 |
| SMART | SM00256 | fbox_2 | 10 | 50 | 0.0039 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 4 | 39 | 9.92138 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G42720.1 | FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein. | 0 |
| RefSeq | XP_021692271.1 | - | 0 |
| Q6DR13 | F-box/LRR-repeat protein At2g42720 OS=Arabidopsis thaliana OX=3702 GN=At2g42720 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2H5QTC4 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology