Basic Information
Locus ID:
nbisL1-mrna-27610
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
U-box domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 26311838 | 26315980 | + | nbisL1-mrna-27610 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.80 | 93,974.76 Da | 45.96 | 76.57 | -0.50 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01989 | STK_N | 22 | 164 | 3.14768E-43 | - |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 462 | 717 | 1.0E-39 | IPR001245 |
| SUPERFAMILY | SSF52402 | Adenine nucleotide alpha hydrolases-like | 25 | 161 | 2.01E-9 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 442 | 717 | 5.74E-68 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 428 | 533 | 3.2E-24 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 534 | 736 | 8.1E-49 | - |
| Gene3D | G3DSA:3.40.50.620 | HUPs | 24 | 161 | 1.1E-7 | IPR014729 |
| SMART | SM00220 | serkin_6 | 461 | 724 | 5.2E-27 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 461 | 724 | 34.930073 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 579 | 591 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 165 | 254 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 229 | 254 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 165 | 180 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 290 | 329 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 290 | 331 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 186 | 210 | - | - |
| Coils | Coil | Coil | 329 | 349 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G12000.1 | Protein kinase protein with adenine nucleotide alpha hydrolases-like domain. | 0 |
| RefSeq | XP_038707559.1 | U-box domain-containing protein 52-like isoform X1 [Tripterygium wilfordii] | 0 |
| Q9FKG6 | U-box domain-containing protein 52 OS=Arabidopsis thaliana OX=3702 GN=PUB52 PE=2 SV=1 | 0 | |
| TrEMBL | A0A7J7DGV2 | U-box domain-containing protein 52-like OS=Tripterygium wilfordii OX=458696 GN=HS088_TW07G01124 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology