Basic Information
Locus ID:
nbisL1-mrna-27601
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 26236308 | 26240261 | - | nbisL1-mrna-27601 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.08 | 37,707.43 Da | 27.91 | 92.84 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00063 | Myosin head (motor domain) | 205 | 330 | 1.3E-27 | IPR001609 |
| Pfam | PF00063 | Myosin head (motor domain) | 96 | 167 | 2.3E-17 | IPR001609 |
| Pfam | PF02736 | Myosin N-terminal SH3-like domain | 43 | 77 | 5.8E-11 | IPR004009 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 45 | 329 | 1.42E-64 | IPR027417 |
| Gene3D | G3DSA:1.10.10.820 | - | 171 | 203 | 4.3E-5 | - |
| Gene3D | G3DSA:1.20.120.720 | Myosin VI head, motor domain, U50 subdomain | 204 | 329 | 8.1E-34 | - |
| Gene3D | G3DSA:3.40.850.10 | Kinesin motor domain | 44 | 170 | 1.8E-30 | IPR036961 |
| SMART | SM00242 | MYSc_2a | 88 | 337 | 3.3E-13 | IPR001609 |
| ProSiteProfiles | PS51844 | Myosin N-terminal SH3-like domain profile. | 40 | 89 | 16.269049 | IPR004009 |
| ProSiteProfiles | PS51456 | Myosin motor domain profile. | 94 | 338 | 45.865944 | IPR001609 |
Gene Ontology
Molecular Function:
Cellular Component:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G20490.1 | Myosin family protein with Dil domain. Encodes a member of the type XI myosin protein family involved in root hair growth, trichome development, and organelle trafficking. This gene appears to be expressed at low levels throughout the plant. | 0 |
| RefSeq | XP_021294147.1 | - | 0 |
| F4K5J1 | Myosin-17 OS=Arabidopsis thaliana OX=3702 GN=XI-K PE=1 SV=2 | 0 | |
| TrEMBL | A0A7J8MZ46 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Beta vulgaris | 1 | BVRB_2g033730 |
| Amaranthaceae | Suaeda glauca | 6 | Sgl21469, Sgl32083, Sgl32764, Sgl38048, Sgl47658, Sgl73332 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000046696 |
| Apiaceae | Apium graveolens | 1 | Ag10G00690 |
| Arecaceae | Cocos nucifera | 1 | COCNU_13G001510 |
| Brassicaceae | Brassica nigra | 2 | BniB05g004830.2N, BniB06g055190.2N |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate08g23920 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00013377 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G18016 |
| Poaceae | Echinochloa crus-galli | 2 | AH02.2141, BH01.50 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_009586, gene-QYE76_028916 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr05G022250, Chr0G030460, Chr12G037710, Chr13G016450 |
| Poaceae | Zea mays | 1 | Zm00001eb343050_P001 |
| Poaceae | Zoysia japonica | 3 | nbis-gene-15709, nbis-gene-16142, nbis-gene-29400 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG15.968, evm.TU.LG16.1283, evm.TU.LG20.1277 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_9_RagTag.974 |
| Rhizophoraceae | Carallia pectinifolia | 4 | nbisL1-mrna-21221, nbisL1-mrna-26239, nbisL1-mrna-27601 ... |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-7005 |
| Rhizophoraceae | Ceriops zippeliana | 4 | nbisL1-mrna-10312, nbisL1-mrna-18336, nbisL1-mrna-7266 ... |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000003l.481 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00009784 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-5074, nbisL1-mrna-5075 |
| Salicaceae | Populus euphratica | 2 | populus_peu11888, populus_peu37973 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132635994 |