Basic Information
Locus ID:
nbisL1-mrna-2757
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
C4-type zinc-finger of DNA polymerase delta
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr02 | 254120 | 257949 | + | nbisL1-mrna-2757 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.99 | 93,169.42 Da | 55.61 | 55.57 | -1.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 377 | 405 | 4.3E-9 | IPR001876 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 370 | 406 | 3.14E-7 | IPR036443 |
| Gene3D | G3DSA:4.10.1060.10 | - | 369 | 409 | 9.7E-16 | - |
| SMART | SM00547 | zf_4 | 379 | 403 | 6.8E-6 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 377 | 406 | 10.048569 | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 381 | 400 | - | IPR001876 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 533 | 551 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 438 | 469 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 438 | 464 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 748 | 762 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 604 | 628 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 488 | 796 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 666 | 704 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 729 | 747 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 504 | 521 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G55040.1 | zinc finger (Ran-binding) family protein. | 0 |
| RefSeq | XP_052302205.1 | uncharacterized protein LOC7473293 isoform X6 [Populus trichocarpa] | 0 |
| Q8S9K3 | Zinc finger protein VAR3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=VAR3 PE=1 SV=2 | 0 | |
| TrEMBL | A0A2P2IUY3 | DNA polymerase OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology