Basic Information
Locus ID:
nbisL1-mrna-27532
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
Oligouridylate-binding protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 25601629 | 25606080 | - | nbisL1-mrna-27532 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.69 | 45,923.12 Da | 48.49 | 71.97 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12619 | RRM2_PUB1 | 139 | 213 | 5.87856E-52 | - |
| CDD | cd12352 | RRM1_TIA1_like | 55 | 125 | 6.18594E-37 | - |
| CDD | cd12354 | RRM3_TIA1_like | 259 | 334 | 3.4952E-33 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 55 | 121 | 1.8E-12 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 261 | 322 | 3.7E-10 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 140 | 210 | 1.6E-17 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 247 | 338 | 1.33E-19 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 132 | 219 | 9.13E-27 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 38 | 131 | 2.28E-23 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 226 | 339 | 4.7E-21 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 137 | 217 | 2.9E-24 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 3 | 136 | 5.7E-23 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 54 | 123 | 1.1E-16 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 139 | 212 | 8.0E-24 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 260 | 330 | 1.9E-14 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 53 | 127 | 15.203922 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 259 | 334 | 14.641094 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 138 | 216 | 17.028851 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 216 | 257 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 219 | 257 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17370.1 | oligouridylate binding protein 1B. | 0 |
| RefSeq | XP_040952181.1 | oligouridylate-binding protein 1B-like [Gossypium hirsutum] | 0 |
| Q9LQI9 | Oligouridylate-binding protein 1B OS=Arabidopsis thaliana OX=3702 GN=UBP1B PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2MF46 | Uncharacterized protein MANES_11G016600 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology