Basic Information
Locus ID:
nbisL1-mrna-2749
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
SEC12-like protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 002177F_pilon | 5114721 | 5118771 | + | nbisL1-mrna-2749 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.85 | 40,376.93 Da | 40.59 | 98.06 | 0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 223 | 241 | 0.093 | IPR001680 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 117 | 339 | 1.02E-25 | IPR011047 |
| Gene3D | G3DSA:2.130.10.10 | - | 62 | 347 | 1.3E-36 | IPR015943 |
| SMART | SM00320 | WD40_4 | 214 | 252 | 0.27 | IPR001680 |
| SMART | SM00320 | WD40_4 | 302 | 341 | 1.6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 172 | 210 | 1.8 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 227 | 261 | 8.570195 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 32 | 51 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 32 | 59 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G01470.1 | SEC12P-like 2 protein. Sec12p-like protein (GTP exchange protein) that functionally complements yeast sec12 null mutant. Protein is localized to the ER. | 0 |
| RefSeq | XP_021600013.1 | SEC12-like protein 2 [Manihot esculenta] | 0 |
| Q39221 | SEC12-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=STL2P PE=1 SV=4 | 0 | |
| TrEMBL | A0A2P2KSE6 | SEC12-like protein 2 isoform X2 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology