HalophFGD

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Basic Information
Locus ID: nbisL1-mrna-2744
Species & Taxonomic ID: Rhizophora apiculata & 106626
Genome Assembly: GCA_037832385.1
Short Name: GLT1
Description: glutamate synthase
Maps and Mapping Data
Chromosome Start End Strand ID
chr5 11574081 11585576 - nbisL1-mrna-2744
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
6.52 247,016.95 Da 35.46 85.24 -0.29
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
CDD cd02808 GltS_FMN 955 1334 1.23417E-167 IPR002932
CDD cd00713 GltS 121 543 0.0 -
CDD cd00982 gltB_C 1382 1631 1.16604E-148 IPR002489
Pfam PF01645 Conserved region in glutamate synthase 953 1321 5.1E-152 IPR002932
Pfam PF01493 GXGXG motif 1405 1591 1.3E-85 IPR002489
Pfam PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster 1742 1838 1.1E-19 IPR028261
Pfam PF00310 Glutamine amidotransferases class-II 121 548 4.0E-184 IPR017932
Pfam PF04898 Glutamate synthase central domain 598 886 2.4E-113 IPR006982
Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 1851 2177 8.0E-25 IPR023753
SUPERFAMILY SSF56235 N-terminal nucleophile aminohydrolases (Ntn hydrolases) 121 551 1.89E-149 IPR029055
SUPERFAMILY SSF51905 FAD/NAD(P)-binding domain 1848 2189 4.92E-59 IPR036188
SUPERFAMILY SSF69336 Alpha subunit of glutamate synthase, C-terminal domain 1374 1638 7.06E-98 IPR036485
SUPERFAMILY SSF51395 FMN-linked oxidoreductases 593 1356 3.21E-252 -
SUPERFAMILY SSF46548 alpha-helical ferredoxin 1704 1861 3.19E-35 -
Gene3D G3DSA:2.160.20.60 - 1378 1648 1.0E-108 IPR036485
Gene3D G3DSA:1.10.1060.10 - 1681 1850 5.2E-40 IPR009051
Gene3D G3DSA:3.40.50.720 - 1851 1959 5.2E-14 -
Gene3D G3DSA:3.20.20.70 Aldolase class I 933 1376 4.2E-202 IPR013785
Gene3D G3DSA:3.20.20.70 Aldolase class I 575 930 6.3E-135 IPR013785
Gene3D G3DSA:3.60.20.10 Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 121 560 2.7E-198 IPR029055
Gene3D G3DSA:3.50.50.60 - 1960 2121 2.4E-31 IPR036188
TIGRFAM TIGR01317 GOGAT_sm_gam: glutamate synthase, NADH/NADPH, small subunit 1706 2191 6.8E-223 IPR006005
PIRSF PIRSF000187 GOGAT 51 2217 0.0 IPR012220
ProSiteProfiles PS51278 Glutamine amidotransferase type 2 domain profile. 121 525 23.107933 IPR017932
PRINTS PR00419 Adrenodoxin reductase family signature 1875 1888 2.7E-22 -
PRINTS PR00419 Adrenodoxin reductase family signature 1996 2010 2.7E-22 -
PRINTS PR00419 Adrenodoxin reductase family signature 1918 1928 2.7E-22 -
PRINTS PR00419 Adrenodoxin reductase family signature 1852 1874 2.7E-22 -
MobiDBLite mobidb-lite consensus disorder prediction 2198 2220 - -
MobiDBLite mobidb-lite consensus disorder prediction 2198 2246 - -
MobiDBLite mobidb-lite consensus disorder prediction 2221 2235 - -
Coils Coil Coil 1656 1676 - -
Coils Coil Coil 2201 2228 - -
Gene Ontology
Biological Process:
GO:0006537 (glutamate biosynthetic process) GO:0008152 (metabolic process)
Molecular Function:
GO:0003824 (catalytic activity) GO:0005506 (iron ion binding) GO:0010181 (FMN binding) GO:0015930 (glutamate synthase activity) GO:0016040 (glutamate synthase (NADH) activity) GO:0016491 (oxidoreductase activity) GO:0016638 (oxidoreductase activity, acting on the CH-NH2 group of donors) GO:0016639 (oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor) GO:0050660 (flavin adenine dinucleotide binding) GO:0051536 (iron-sulfur cluster binding)
KEGG Pathway
KO Term:
K00264 (glutamate synthase (NADH) [EC:1.4.1.14])
Pathway:
ko00250 (Alanine, aspartate and glutamate metabolism) map00250 (Alanine, aspartate and glutamate metabolism) ko00910 (Nitrogen metabolism) map00910 (Nitrogen metabolism) ko01100 (Metabolic pathways) map01100 (Metabolic pathways) ko01110 (Biosynthesis of secondary metabolites) map01110 (Biosynthesis of secondary metabolites) ko01120 (Microbial metabolism in diverse environments) map01120 (Microbial metabolism in diverse environments) ko01230 (Biosynthesis of amino acids) map01230 (Biosynthesis of amino acids)
Reaction:
R00093 (2 L-Glutamate + NAD+ <=> L-Glutamine + 2-Oxoglutarate + NADH + H+) R00114 (2 L-Glutamate + NADP+ <=> L-Glutamine + 2-Oxoglutarate + NADPH + H+) R00248 (L-Glutamate + NADP+ + H2O <=> 2-Oxoglutarate + Ammonia + NADPH + H+)
Best hit
Source Best Hit ID Description E-value
TAIR AT5G53460.1 NADH-dependent glutamate synthase 1. NADH-dependent glutamate synthase 0
RefSeq XP_021682260.1 glutamate synthase 1 [NADH], chloroplastic isoform X1 [Hevea brasiliensis] 0
Swiss-Prot Q9LV03 Glutamate synthase 1 [NADH], chloroplastic OS=Arabidopsis thaliana OX=3702 GN=GLT1 PE=1 SV=2 0
TrEMBL B9RII5 glutamate synthase (NADH) OS=Ricinus communis OX=3988 GN=RCOM_1579610 PE=3 SV=1 0
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network

No network data available for this species.

Orthology
Family Species Count Orthologous Genes
Acanthaceae Avicennia marina 2 jg13893, jg2196
Aizoaceae Mesembryanthemum crystallinum 1 gene_3295
Amaranthaceae Atriplex hortensis 1 Ah018647
Amaranthaceae Beta vulgaris 1 BVRB_3g052140
Amaranthaceae Salicornia bigelovii 2 Sbi_jg15107, Sbi_jg55939
Amaranthaceae Salicornia europaea 1 Seu_jg26420
Amaranthaceae Suaeda aralocaspica 1 GOSA_00020044
Amaranthaceae Suaeda glauca 5 Sgl01374, Sgl01440, Sgl01441, Sgl06449, Sgl06528
Amaranthaceae Chenopodium album 3 gene:ENSEOMG00000000510, gene:ENSEOMG00000031859 ...
gene:ENSEOMG00000043885
Amaranthaceae Chenopodium quinoa 2 CQ.Regalona.r1.3AG0004880, CQ.Regalona.r1.3BG0004920
Anacardiaceae Pistacia vera 1 pistato.v30185180
Apiaceae Apium graveolens 2 Ag10G02525, AgUnG00467
Arecaceae Cocos nucifera 2 COCNU_03G013130, scaffold000561G000020
Arecaceae Phoenix dactylifera 2 gene-LOC103708325, gene-LOC103713334
Asparagaceae Asparagus officinalis 1 AsparagusV1_05.2833.V1.1
Asteraceae Flaveria trinervia 1 Ftri18G12439
Brassicaceae Arabidopsis thaliana 1 AT5G53460.1
Brassicaceae Eutrema salsugineum 1 Thhalv10012414m.g.v1.0
Brassicaceae Schrenkiella parvula 1 Sp6g15593.v2.2
Brassicaceae Brassica nigra 1 BniB08g016600.2N
Casuarinaceae Casuarina equisetifolia 1 Ceq09G1606
Casuarinaceae Casuarina glauca 1 Cgl09G1742
Cymodoceaceae Cymodocea nodosa 2 gene.Cymno02g12650, gene.Cymno12g01560
Dunaliellaceae Dunaliella salina 1 Dusal.0052s00003.v1.0
Hydrocharitaceae Thalassia testudinum 2 gene.Thate03g24920, gene.Thate09g14990
Nitrariaceae Nitraria sibirica 1 evm.TU.LG01.2897
Plantaginaceae Plantago ovata 1 Pov_00041146
Plumbaginaceae Limonium bicolor 2 Lb0G37740, Lb7G32942
Poaceae Echinochloa crus-galli 5 AH02.2769, AH05.1457, BH02.2852, BH05.1626, CH02.3687
Poaceae Eleusine coracana subsp. coracana 4 gene-QOZ80_1AG0028780, gene-QOZ80_1BG0079010 ...
gene-QOZ80_5AG0363860, gene-QOZ80_5BG0411960
Poaceae Hordeum vulgare 1 HORVU.MOREX.r3.3HG0280530.1
Poaceae Lolium multiflorum 2 gene-QYE76_054594, gene-QYE76_054602
Poaceae Oryza coarctata 4 Oco01G017400, Oco02G017650, Oco09G016320, Oco10G016130
Poaceae Oryza sativa 2 LOC_Os01g48960.1, LOC_Os05g48200.1
Poaceae Paspalum vaginatum 3 gene-BS78_03G233100, gene-BS78_03G236800 ...
gene-BS78_09G229900
Poaceae Puccinellia tenuiflora 1 Pt_Chr0602367
Poaceae Sporobolus alterniflorus 3 Chr02G012560, Chr03G013590, Chr08G013750
Poaceae Thinopyrum elongatum 1 Tel3E01G442300
Poaceae Triticum dicoccoides 2 gene_TRIDC3AG039670, gene_TRIDC3BG044820
Poaceae Triticum aestivum 3 TraesCS3A02G266300.1, TraesCS3B02G299800.1 ...
TraesCS3D02G266400.1
Poaceae Zea mays 3 Zm00001eb156610_P002, Zm00001eb295220_P001 ...
Zm00001eb360480_P005
Poaceae Zoysia japonica 2 nbis-gene-12580, nbis-gene-26118
Poaceae Zoysia macrostachya 2 Zma_g10886, Zma_g8437
Portulacaceae Portulaca oleracea 1 evm.TU.LG06.1967
Posidoniaceae Posidonia oceanica 2 gene.Posoc08g13790, gene.Posoc09g09130
Rhizophoraceae Bruguiera sexangula 2 evm.TU.Scaffold_1_RagTag.622, evm.TU.Scaffold_2_RagTag.1648
Rhizophoraceae Carallia pectinifolia 2 nbisL1-mrna-3559, nbisL1-mrna-7507
Rhizophoraceae Ceriops tagal 2 nbisL1-mrna-2555, nbisL1-mrna-921
Rhizophoraceae Ceriops zippeliana 2 nbisL1-mrna-14013, nbisL1-mrna-5641
Rhizophoraceae Kandelia candel 2 evm.TU.utg000009l.314, evm.TU.utg000012l.386
Rhizophoraceae Kandelia obovata 2 Maker00005974, Maker00011451
Rhizophoraceae Rhizophora apiculata 2 nbisL1-mrna-2744, nbisL1-mrna-8412
Rhizophoraceae Rhizophora mangle 2 nbisL1-mrna-16769, nbisL1-mrna-743
Salicaceae Populus euphratica 3 populus_peu28067, populus_peu29502, populus_peu29503
Solanaceae Lycium barbarum 1 gene-LOC132632063
Solanaceae Solanum pennellii 1 gene-LOC107013700
Tamaricaceae Reaumuria soongarica 1 gene_5260
Tamaricaceae Tamarix chinensis 1 TC06G1506
Zosteraceae Zostera marina 2 Zosma01g06270.v3.1, Zosma01g22390.v3.1
Maintained by Hengyu Yan - College of Agronomy - Qingdao Agricultural University © 2024 All Rights Reserved.