Basic Information
Locus ID:
nbisL1-mrna-27432
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
PRA1 family protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 24873009 | 24875949 | - | nbisL1-mrna-27432 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.60 | 93,658.10 Da | 32.75 | 99.03 | -0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 578 | 843 | 5.34994E-96 | - |
| Pfam | PF13516 | Leucine Rich repeat | 388 | 403 | 0.24 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 270 | 328 | 3.3E-9 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 191 | 250 | 3.8E-8 | IPR001611 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 576 | 840 | 1.5E-42 | IPR001245 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 77 | 115 | 1.3E-8 | IPR013210 |
| SUPERFAMILY | SSF52058 | L domain-like | 114 | 456 | 3.4E-63 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 576 | 844 | 3.24E-64 | IPR011009 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 74 | 268 | 1.1E-46 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 650 | 856 | 3.1E-52 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 578 | 649 | 5.4E-19 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 270 | 463 | 6.3E-60 | IPR032675 |
| SMART | SM00369 | LRR_typ_2 | 387 | 411 | 360.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 189 | 212 | 370.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 339 | 363 | 2.6 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 291 | 315 | 14.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 141 | 165 | 69.0 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 572 | 843 | 36.103195 | IPR000719 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 389 | 412 | 7.088198 | IPR001611 |
| PRINTS | PR00019 | Leucine-rich repeat signature | 387 | 400 | 1.2E-5 | - |
| PRINTS | PR00019 | Leucine-rich repeat signature | 192 | 205 | 1.2E-5 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 845 | 872 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 842 | 872 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G51740.1 | inflorescence meristem receptor-like kinase 2. encodes a leucine-repeat receptor kinase expressed in inflorescence meristem. Locus association was made from performing sequence analysis with IMK3 (MRLK) whose locus association was provided by the authors. | 0 |
| RefSeq | XP_034906943.1 | probably inactive leucine-rich repeat receptor-like protein kinase IMK2 [Populus alba] | 0 |
| C0LGP9 | Probable leucine-rich repeat receptor-like protein kinase IMK3 OS=Arabidopsis thaliana OX=3702 GN=IMK3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8T2XVE8 | Protein kinase domain-containing protein OS=Populus deltoides OX=3696 GN=H0E87_019528 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg10054, jg3223, jg34105 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_17044, gene_2292 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah003217, Ah035126 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g103410 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg21512, Sbi_jg22304, Sbi_jg24302, Sbi_jg8132 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg11890, Seu_jg16233 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00008824, GOSA_00010969 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl52485, Sgl57780, Sgl62779, Sgl67395 |
| Amaranthaceae | Chenopodium album | 5 | gene:ENSEOMG00000016331, gene:ENSEOMG00000017547 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.1BG0020510, CQ.Regalona.r1.2AG0022240 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30177530 |
| Apiaceae | Apium graveolens | 1 | Ag8G00053 |
| Arecaceae | Cocos nucifera | 2 | COCNU_04G003850, COCNU_16G006070 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103714373, gene-LOC103721516 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_07.616.V1.1, AsparagusV1_08.3390.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri11G18439, Ftri18G26967, Ftri9G29010 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT3G51740.1, AT3G56100.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10006389m.g.v1.0, Thhalv10010123m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp5g06430.v2.2, Sp5g10540.v2.2 |
| Brassicaceae | Brassica nigra | 9 | BniB05g021670.2N, BniB06g055850.2N, BniB06g056600.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq02G0071, Ceq08G0956 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl02G0080, Cgl08G0974 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno18g00750 |
| Hydrocharitaceae | Thalassia testudinum | 5 | gene.Thate01g31960, gene.Thate02g08360, gene.Thate04g26270 ... |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 5 | nbisL1-mrna-3630, nbisL1-mrna-3923, nbisL1-mrna-6067 ... |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG01.949, evm.TU.LG02.1925 |
| Plantaginaceae | Plantago ovata | 3 | Pov_00002652, Pov_00011746, Pov_00040611 |
| Plumbaginaceae | Limonium bicolor | 5 | Lb1G04054, Lb2G09143, Lb2G09152, Lb3G16166, Lb3G19314 |
| Poaceae | Echinochloa crus-galli | 7 | AH01.3948, AH05.71, BH01.4347, BH04.44, CH01.4579, CH04.48 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_3AG0244750, gene-QOZ80_3BG0283330 ... |
| Poaceae | Hordeum vulgare | 3 | HORVU.MOREX.r3.2HG0117160.1, HORVU.MOREX.r3.4HG0354540.1 ... |
| Poaceae | Lolium multiflorum | 5 | gene-QYE76_003694, gene-QYE76_003695, gene-QYE76_065367 ... |
| Poaceae | Oryza coarctata | 3 | Oco05G010980, Oco06G011230, Oco22G000200 |
| Poaceae | Oryza sativa | 3 | LOC_Os03g18630.1, LOC_Os11g01620.1, LOC_Os12g01700.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G385500 |
| Poaceae | Puccinellia tenuiflora | 5 | Pt_Chr0102491, Pt_Chr0103573, Pt_Chr0103620, Pt_Chr0702851 ... |
| Poaceae | Sporobolus alterniflorus | 7 | Chr01G032340, Chr04G009030, Chr04G020830, Chr06G022480 ... |
| Poaceae | Thinopyrum elongatum | 3 | Tel2E01G271900, Tel4E01G212900, Tel4E01G339500 |
| Poaceae | Triticum dicoccoides | 7 | gene_TRIDC2AG016200, gene_TRIDC2BG019510 ... |
| Poaceae | Triticum aestivum | 10 | TraesCS2A02G131700.1, TraesCS2B02G154100.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb013800_P001, Zm00001eb195080_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-1928, nbis-gene-25834 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g1425, Zma_g24603 |
| Portulacaceae | Portulaca oleracea | 6 | evm.TU.LG04.2803, evm.TU.LG05.537, evm.TU.LG10.23 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc07g13520 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_1_RagTag.1870, evm.TU.Scaffold_2_RagTag.582 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-27432 |
| Rhizophoraceae | Ceriops tagal | 3 | nbisL1-mrna-1348, nbisL1-mrna-16989, nbisL1-mrna-8211 |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-1491, nbisL1-mrna-3659, nbisL1-mrna-9612 |
| Rhizophoraceae | Kandelia candel | 3 | add.evm.TU.utg000008l.220, evm.TU.utg000009l.990 ... |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00005646, Maker00016379 |
| Rhizophoraceae | Rhizophora apiculata | 3 | nbisL1-mrna-14322, nbisL1-mrna-2659, nbisL1-mrna-4920 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-19384 |
| Salicaceae | Populus euphratica | 4 | populus_peu06601, populus_peu11471, populus_peu20484 ... |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132609120, gene-LOC132630936, gene-LOC132640425 |
| Solanaceae | Solanum chilense | 3 | SOLCI003903700, SOLCI004778600, SOLCI004993400 |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107020781, gene-LOC107021434, gene-LOC107031627 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.24956_chr08_-, gene_13941 |
| Tamaricaceae | Tamarix chinensis | 2 | TC01G4372, TC05G2755 |
| Zosteraceae | Zostera marina | 2 | Zosma02g07370.v3.1, Zosma06g15060.v3.1 |