Basic Information
Locus ID:
nbisL1-mrna-2743
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 11568661 | 11571091 | - | nbisL1-mrna-2743 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.75 | 40,417.56 Da | 55.32 | 84.95 | -0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 317 | 360 | 2.08014E-15 | - |
| Pfam | PF13639 | Ring finger domain | 317 | 360 | 3.5E-12 | IPR001841 |
| Pfam | PF13947 | Wall-associated receptor kinase galacturonan-binding | 26 | 94 | 2.5E-19 | IPR025287 |
| Pfam | PF14380 | Wall-associated receptor kinase C-terminal | 158 | 225 | 1.1E-6 | IPR032872 |
| SUPERFAMILY | SSF57850 | RING/U-box | 317 | 369 | 5.98E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 283 | 365 | 3.5E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 318 | 359 | 6.2E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 318 | 360 | 12.651561 | IPR001841 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G53110.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_002513558.2 | putative RING-H2 finger protein ATL21B [Ricinus communis] | 0 |
| P0CH01 | Putative RING-H2 finger protein ATL21A OS=Arabidopsis thaliana OX=3702 GN=ATL21A PE=3 SV=1 | 0 | |
| TrEMBL | A0A2C9VSS8 | RING-type domain-containing protein OS=Manihot esculenta OX=3983 GN=MANES_06G159100 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology