Basic Information
Locus ID:
nbisL1-mrna-27407
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 24645871 | 24648399 | + | nbisL1-mrna-27407 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.79 | 75,101.28 Da | 49.52 | 108.82 | 0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 295 | 337 | 2.91028E-25 | - |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 432 | 469 | 2.5E-9 | IPR000225 |
| Pfam | PF04564 | U-box domain | 291 | 362 | 1.5E-21 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 278 | 366 | 2.31E-30 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 370 | 679 | 2.12E-41 | IPR016024 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 290 | 364 | 1.6E-29 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 495 | 684 | 4.4E-23 | IPR011989 |
| Gene3D | G3DSA:1.25.10.10 | - | 365 | 494 | 6.8E-19 | IPR011989 |
| SMART | SM00504 | Ubox_2 | 294 | 357 | 1.3E-30 | IPR003613 |
| SMART | SM00185 | arm_5 | 596 | 637 | 280.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 430 | 470 | 1.1E-6 | IPR000225 |
| SMART | SM00185 | arm_5 | 555 | 595 | 1.6 | IPR000225 |
| SMART | SM00185 | arm_5 | 471 | 512 | 480.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 385 | 428 | 230.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 513 | 554 | 64.0 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 441 | 483 | 11.7774 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 525 | 567 | 9.502399 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 290 | 364 | 37.286392 | IPR003613 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 261 | 287 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 260 | 287 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G29340.1 | plant U-box 17. Encodes a protein containing a UND, a U-box, and an ARM domain. This protein has E3 ubiquitin ligase activity. It is required for cell death and full resistance specified by Arabidopsis RPM1 and RPS4 resistance proteins against Pseudomonas syringae pv tomato. | 0 |
| RefSeq | XP_021685280.1 | LOW QUALITY PROTEIN: U-box domain-containing protein 1-like [Hevea brasiliensis] | 0 |
| E4NKF8 | U-box domain-containing protein 1 OS=Medicago truncatula OX=3880 GN=PUB1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5C7GZV1 | RING-type E3 ubiquitin transferase OS=Acer yangbiense OX=1000413 GN=EZV62_025944 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg14251 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_24321 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah035351 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg21470, Sbi_jg22346 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg16274 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00008862 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl62819, Sgl67435 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000022197, gene:ENSEOMG00000051024 |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.1BG0020130, CQ.Regalona.r1.1BG0020140 ... |
| Apiaceae | Apium graveolens | 2 | Ag8G00005, Ag8G00428 |
| Arecaceae | Cocos nucifera | 1 | scaffold140503G000010 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103722788 |
| Asteraceae | Flaveria trinervia | 1 | Ftri6G08961 |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G0098 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G0109 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.1901 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00011778 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_4_RagTag.931 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-27407 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-16811, nbisL1-mrna-7415 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-1472 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000008l.225 |
| Salicaceae | Populus euphratica | 2 | populus_peu06578, populus_peu20458 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132609025 |
| Solanaceae | Solanum chilense | 1 | SOLCI006082200 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107022959 |