Basic Information
Locus ID:
nbisL1-mrna-27242
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
f-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 23220973 | 23223169 | - | nbisL1-mrna-27242 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.19 | 33,533.68 Da | 48.38 | 68.47 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01753 | MYND finger | 241 | 280 | 9.0E-8 | IPR002893 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 234 | 285 | 3.49E-10 | - |
| SUPERFAMILY | SSF81901 | HCP-like | 33 | 155 | 1.96E-13 | - |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 23 | 174 | 3.5E-18 | IPR011990 |
| Gene3D | G3DSA:6.10.140.2220 | - | 232 | 284 | 3.0E-10 | - |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 238 | 280 | 10.937226 | IPR002893 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 286 | 307 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 293 | 307 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G67340.1 | HCP-like superfamily protein with MYND-type zinc finger. | 0 |
| RefSeq | XP_012085679.1 | F-box protein At1g67340 [Jatropha curcas] | 0 |
| Q9FYF9 | F-box protein At1g67340 OS=Arabidopsis thaliana OX=3702 GN=At1g67340 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2L226 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology