halophFGD

Basic Information

Locus ID: nbisL1-mrna-27223

Species & Taxonomic ID: Carallia pectinifolia & 98586

Genome Assembly: GCA_037832335.1

Description: Cyclin-dependent kinase

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr11	23071377	23074824	+	nbisL1-mrna-27223

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.79	81,371.73 Da	56.37	70.33	-0.84

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd07843	STKc_CDC2L1	415	668	0.0	-
Pfam	PF00069	Protein kinase domain	421	587	1.1E-45	IPR000719
SUPERFAMILY	SSF56112	Protein kinase-like (PK-like)	413	674	1.01E-72	IPR011009
Gene3D	G3DSA:1.10.510.10	Transferase(Phosphotransferase) domain 1	504	588	2.2E-27	-
Gene3D	G3DSA:1.10.510.10	Transferase(Phosphotransferase) domain 1	589	698	2.6E-14	-
Gene3D	G3DSA:3.30.200.20	Phosphorylase Kinase; domain 1	406	503	3.3E-33	-
SMART	SM00220	serkin_6	421	668	1.7E-64	IPR000719
ProSiteProfiles	PS50011	Protein kinase domain profile.	421	668	33.926559	IPR000719
ProSitePatterns	PS00108	Serine/Threonine protein kinases active-site signature.	541	553	-	IPR008271
MobiDBLite	mobidb-lite	consensus disorder prediction	688	712	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1	64	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	241	255	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	93	107	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	684	723	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	271	285	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	164	362	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	295	362	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1	127	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	169	183	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	383	409	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	66	84	-	-

Gene Ontology

Biological Process:

GO:0006468 (protein phosphorylation)

Molecular Function:

GO:0004672 (protein kinase activity) GO:0005524 (ATP binding)

KEGG Pathway

KO Term:

K08818 (cell division cycle 2-like [EC:2.7.11.22])

Best hit

Source	Best Hit ID	Description
TAIR	AT1G67580.1	Protein kinase superfamily protein.
RefSeq	XP_021635301.1	cyclin-dependent kinase G-2 [Hevea brasiliensis]
Swiss-Prot	A2XUW1	Cyclin-dependent kinase G-2 OS=Oryza sativa subsp. indica OX=39946 GN=CDKG-2 PE=3 SV=1
TrEMBL	A0A2P2M8U2	cyclin-dependent kinase OS=Rhizophora mucronata OX=61149 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	3	jg34538, jg6974, jg9566
Aizoaceae	Mesembryanthemum crystallinum	2	gene_14028, gene_3533
Amaranthaceae	Atriplex hortensis	4	Ah001971, Ah005524, Ah013849, Ah013898
Amaranthaceae	Beta vulgaris	3	BVRB_4g078040, BVRB_5g110640, BVRB_6g151410
Amaranthaceae	Salicornia bigelovii	6	Sbi_jg32561, Sbi_jg32562, Sbi_jg32568, Sbi_jg32570 ... Sbi_jg42716, Sbi_jg45339
Amaranthaceae	Salicornia europaea	2	Seu_jg11202, Seu_jg7525
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00002599, GOSA_00017220
Amaranthaceae	Suaeda glauca	4	Sgl35072, Sgl40457, Sgl53233, Sgl58495
Amaranthaceae	Chenopodium album	9	gene:ENSEOMG00000000231, gene:ENSEOMG00000005153 ... gene:ENSEOMG00000010450, gene:ENSEOMG00000015814, gene:ENSEOMG00000023262, gene:ENSEOMG00000024277, gene:ENSEOMG00000026485, gene:ENSEOMG00000031304, gene:ENSEOMG00000043873
Amaranthaceae	Chenopodium quinoa	6	CQ.Regalona.r1.4AG0006190, CQ.Regalona.r1.4BG0006340 ... CQ.Regalona.r1.5AG0016210, CQ.Regalona.r1.5BG0017470, CQ.Regalona.r1.6AG0003440, CQ.Regalona.r1.6BG0003340
Anacardiaceae	Pistacia vera	4	pistato.v30140920, pistato.v30141430, pistato.v30223570 ... pistato.v30228210
Apiaceae	Apium graveolens	9	Ag10G01211, Ag10G01214, Ag10G01215, Ag4G01407, Ag5G01941 ... Ag5G01942, Ag5G02268, Ag8G02267, Ag8G02268
Arecaceae	Cocos nucifera	3	COCNU_02G013000, scaffold009612G000010 ... scaffold009941G000010
Arecaceae	Phoenix dactylifera	2	gene-LOC103714762, gene-LOC103719868
Asparagaceae	Asparagus officinalis	2	AsparagusV1_04.2001.V1.1, AsparagusV1_09.618.V1.1
Asteraceae	Flaveria trinervia	4	Ftri18G11566, Ftri1G29156, Ftri8G32205, Ftri9G14122
Brassicaceae	Arabidopsis thaliana	2	AT1G67580.1, AT5G63370.1
Brassicaceae	Eutrema salsugineum	3	Thhalv10003850m.g.v1.0, Thhalv10010233m.g.v1.0 ... Thhalv10018174m.g.v1.0
Brassicaceae	Schrenkiella parvula	3	Sp2g26460.v2.2, Sp5g13470.v2.2, Sp5g22600.v2.2
Brassicaceae	Brassica nigra	3	BniB03g044790.2N, BniB04g001940.2N, BniB06g023760.2N
Casuarinaceae	Casuarina equisetifolia	2	Ceq04G1697, Ceq07G1265
Casuarinaceae	Casuarina glauca	2	Cgl04G1880, Cgl07G1340
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno07g08230, gene.Cymno08g04980
Dunaliellaceae	Dunaliella salina	3	Dusal.0007s00016.v1.0, Dusal.0069s00015.v1.0 ... Dusal.1990s00001.v1.0
Hydrocharitaceae	Thalassia testudinum	2	gene.Thate01g15480, gene.Thate06g10700
Malvaceae	Hibiscus hamabo Siebold & Zucc.	2	nbisL1-mrna-11507, nbisL1-mrna-5586
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG03.724, evm.TU.LG10.1042
Plantaginaceae	Plantago ovata	2	Pov_00022226, Pov_00033718
Plumbaginaceae	Limonium bicolor	2	Lb0G38404, Lb1G07775
Poaceae	Echinochloa crus-galli	6	AH07.2501, AH09.1383, BH07.2308, BH09.1566, CH07.2384 ... CH09.1685
Poaceae	Eleusine coracana subsp. coracana	4	gene-QOZ80_2AG0136530, gene-QOZ80_2BG0192090 ... gene-QOZ80_4AG0312760, gene-QOZ80_4BG0343930
Poaceae	Hordeum vulgare	2	HORVU.MOREX.r3.2HG0177110.1, HORVU.MOREX.r3.6HG0592200.1
Poaceae	Lolium multiflorum	2	gene-QYE76_023499, gene-QYE76_044781
Poaceae	Oryza coarctata	4	Oco03G014550, Oco04G015010, Oco07G009170, Oco08G009030
Poaceae	Oryza sativa	2	LOC_Os02g39010.1, LOC_Os04g41100.4
Poaceae	Paspalum vaginatum	2	gene-BS78_04G161900, gene-BS78_06G142200
Poaceae	Puccinellia tenuiflora	3	Pt_Chr0204505, Pt_Chr0302306, Pt_Chr0307200
Poaceae	Sporobolus alterniflorus	8	Chr06G007850, Chr09G012370, Chr13G008300, Chr15G009510 ... Chr23G010070, Chr25G009590, Chr26G009700, Chr30G009420
Poaceae	Thinopyrum elongatum	2	Tel2E01G602800, Tel6E01G416500
Poaceae	Triticum dicoccoides	3	gene_TRIDC2AG050100, gene_TRIDC6AG033190 ... gene_TRIDC6BG039510
Poaceae	Triticum aestivum	6	TraesCS2A02G346500.1, TraesCS2B02G364800.5 ... TraesCS2D02G345200.4, TraesCS6A02G214100.1, TraesCS6B02G244100.1, TraesCS6D02G196700.1
Poaceae	Zea mays	3	Zm00001eb078950_P001, Zm00001eb246420_P001 ... Zm00001eb425450_P001
Poaceae	Zoysia japonica	2	nbis-gene-18605, nbis-gene-7336
Poaceae	Zoysia macrostachya	2	Zma_g16630, Zma_g21507
Portulacaceae	Portulaca oleracea	3	evm.TU.LG01.2822, evm.TU.LG03.1350, evm.TU.LG12.407
Posidoniaceae	Posidonia oceanica	1	gene.Posoc05g14870
Rhizophoraceae	Bruguiera sexangula	4	evm.TU.60456.9, evm.TU.Scaffold_11_RagTag.1539 ... evm.TU.Scaffold_15_RagTag.847, evm.TU.Scaffold_17_RagTag.150
Rhizophoraceae	Carallia pectinifolia	4	nbisL1-mrna-12303, nbisL1-mrna-23207, nbisL1-mrna-27035 ... nbisL1-mrna-27223
Rhizophoraceae	Ceriops tagal	3	nbisL1-mrna-11349, nbisL1-mrna-20628, nbisL1-mrna-9309
Rhizophoraceae	Ceriops zippeliana	4	nbisL1-mrna-12686, nbisL1-mrna-14663, nbisL1-mrna-15556 ... nbisL1-mrna-15557
Rhizophoraceae	Kandelia candel	3	evm.TU.utg000001l.467, evm.TU.utg000010l.187 ... evm.TU.utg000013l.93
Rhizophoraceae	Kandelia obovata	3	Maker00002422, Maker00006734, Maker00008894
Rhizophoraceae	Rhizophora apiculata	3	nbisL1-mrna-11190, nbisL1-mrna-676, nbisL1-mrna-7001
Rhizophoraceae	Rhizophora mangle	3	nbisL1-mrna-15962, nbisL1-mrna-17678, nbisL1-mrna-8763
Salicaceae	Populus euphratica	6	populus_peu07639, populus_peu21674, populus_peu21675 ... populus_peu28811, populus_peu28812, populus_peu30224
Solanaceae	Lycium barbarum	2	gene-LOC132616392, gene-LOC132641251
Solanaceae	Solanum chilense	1	SOLCI001817000
Solanaceae	Solanum pennellii	1	gene-LOC107020261
Tamaricaceae	Reaumuria soongarica	4	STRG.19733_chr07_+, STRG.5114_chr03_-, gene_11160, gene_6666
Tamaricaceae	Tamarix chinensis	3	TC04G0731, TC08G2600, TC09G0870
Zosteraceae	Zostera marina	1	Zosma05g07210.v3.1