Basic Information
Locus ID:
nbisL1-mrna-27212
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
ABC transporter C family member
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 22999217 | 23004946 | + | nbisL1-mrna-27212 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.99 | 165,630.95 Da | 36.58 | 106.26 | 0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 932 | 1206 | 3.69772E-65 | IPR044726 |
| CDD | cd03244 | ABCC_MRP_domain2 | 1229 | 1445 | 9.98642E-121 | - |
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 271 | 558 | 2.04816E-96 | IPR044746 |
| CDD | cd03250 | ABCC_MRP_domain1 | 583 | 834 | 1.92068E-89 | - |
| Pfam | PF00005 | ABC transporter | 609 | 740 | 4.0E-17 | IPR003439 |
| Pfam | PF00005 | ABC transporter | 1248 | 1392 | 5.4E-32 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 936 | 1158 | 6.0E-18 | IPR011527 |
| Pfam | PF00664 | ABC transporter transmembrane region | 270 | 537 | 6.0E-27 | IPR011527 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1221 | 1453 | 4.77E-65 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 609 | 757 | 2.0E-35 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 934 | 1211 | 4.84E-43 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 799 | 859 | 1.13E-7 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 266 | 565 | 7.85E-35 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 899 | 1212 | 5.2E-46 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 1214 | 1463 | 8.6E-79 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 258 | 565 | 3.6E-50 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 566 | 870 | 1.2E-61 | IPR027417 |
| SMART | SM00382 | AAA_5 | 1257 | 1440 | 9.8E-12 | IPR003593 |
| SMART | SM00382 | AAA_5 | 614 | 843 | 2.4E-9 | IPR003593 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 274 | 550 | 34.727169 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 585 | 858 | 17.740562 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 934 | 1194 | 29.486912 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1231 | 1461 | 17.580498 | IPR003439 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 713 | 727 | - | IPR017871 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13080.1 | multidrug resistance-associated protein 3. encodes an ATP-dependent MRP-like ABC transporter able to transport glutathione-conjugates as well as chlorophyll catabolites. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. | 0 |
| RefSeq | XP_034914533.1 | putative ABC transporter C family member 15 [Populus alba] | 0 |
| Q9LK64 | ABC transporter C family member 3 OS=Arabidopsis thaliana OX=3702 GN=ABCC3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A4V6ABI6 | ABC-type xenobiotic transporter OS=Populus alba OX=43335 GN=D5086_0000060630 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology