Basic Information
Locus ID:
nbisL1-mrna-2721
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
Belongs to the glycosyl hydrolase 17 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 002177F_pilon | 4847362 | 4851929 | + | nbisL1-mrna-2721 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.27 | 53,504.34 Da | 37.64 | 94.54 | 0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00332 | Glycosyl hydrolases family 17 | 187 | 345 | 5.2E-41 | IPR000490 |
| Pfam | PF07983 | X8 domain | 362 | 433 | 1.4E-16 | IPR012946 |
| SUPERFAMILY | SSF51445 | (Trans)glycosidases | 62 | 345 | 8.79E-72 | IPR017853 |
| Gene3D | G3DSA:3.20.20.80 | Glycosidases | 61 | 189 | 8.0E-37 | - |
| Gene3D | G3DSA:3.20.20.80 | Glycosidases | 190 | 350 | 3.3E-56 | - |
| Gene3D | G3DSA:1.20.58.1040 | - | 355 | 446 | 1.4E-8 | - |
| SMART | SM00768 | X8_cls | 361 | 446 | 9.4E-48 | IPR012946 |
| ProSitePatterns | PS00587 | Glycosyl hydrolases family 17 signature. | 259 | 272 | - | IPR000490 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G01630.1 | O-Glycosyl hydrolases family 17 protein. | 0 |
| RefSeq | XP_015580035.1 | glucan endo-1,3-beta-glucosidase 3 [Ricinus communis] | 0 |
| Q9ZU91 | Glucan endo-1,3-beta-glucosidase 3 OS=Arabidopsis thaliana OX=3702 GN=At2g01630 PE=2 SV=2 | 0 | |
| TrEMBL | B9SP53 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology