Basic Information
Locus ID:
nbisL1-mrna-2720
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
biotin synthase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000060F_pilon | 4927744 | 4933268 | - | nbisL1-mrna-2720 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.27 | 25,831.69 Da | 34.35 | 94.27 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF102114 | Radical SAM enzymes | 123 | 178 | 5.1E-6 | - |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 11 | 75 | 1.04E-8 | IPR036322 |
| Gene3D | G3DSA:3.20.20.70 | Aldolase class I | 123 | 180 | 8.0E-13 | IPR013785 |
| Gene3D | G3DSA:2.130.10.10 | - | 9 | 115 | 1.2E-7 | IPR015943 |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G43360.1 | Radical SAM superfamily protein. Catalyzes the conversion of dethiobiotin to biotin. | 0 |
| RefSeq | XP_021648293.1 | biotin synthase-like [Hevea brasiliensis] | 0 |
| P54967 | Biotin synthase, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=BIO2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A067DS14 | BATS domain-containing protein (Fragment) OS=Citrus sinensis OX=2711 GN=CISIN_1g041306mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg18934, jg5961 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_2908 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah019325 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_3g054800 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg15257, Sbi_jg56066 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg26551 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00006281 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl01702, Sgl01703, Sgl06858 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000009410, gene:ENSEOMG00000031343 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.3AG0000040, CQ.Regalona.r1.4BG0015520 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30243650 |
| Apiaceae | Apium graveolens | 1 | Ag2G00476 |
| Arecaceae | Cocos nucifera | 1 | scaffold034468G000020 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103717547, gene-LOC108511610 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_10.1343.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri17G19843 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G43360.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10001495m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g25460.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB06g002130.2N, BniB08g028310.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq09G2085 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G2284 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno08g03480 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0329s00001.v1.0, Dusal.0329s00002.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g21600 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG11.138 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00008369 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G20461 |
| Poaceae | Echinochloa crus-galli | 3 | AH08.2240, BH08.2370, CH08.2546 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_8AG0638210, gene-QOZ80_8BG0667710 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0686000.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_030413 |
| Poaceae | Oryza coarctata | 2 | Oco15G013680, Oco16G012860 |
| Poaceae | Oryza sativa | 1 | LOC_Os08g42730.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_07G210200 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0403532 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr16G018390, Chr20G002400, Chr29G001080 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G466000 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC7AG035000, gene_TRIDC7BG025990 |
| Poaceae | Triticum aestivum | 3 | TraesCS7A02G267300.1, TraesCS7B02G164700.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb037230_P001, Zm00001eb198320_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-17563, nbis-gene-42757 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g23355, Zma_g24462 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG11.1283, evm.TU.LG11.1286 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc05g15540 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.48677.4, evm.TU.Scaffold_3_RagTag.1465 ... |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-1780 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-15532, nbisL1-mrna-2155 |
| Rhizophoraceae | Ceriops zippeliana | 4 | nbisL1-mrna-2693, nbisL1-mrna-2696, nbisL1-mrna-2720 ... |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000019l.358 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00002258 |
| Rhizophoraceae | Rhizophora apiculata | 3 | nbisL1-mrna-12302, nbisL1-mrna-15781, nbisL1-mrna-21674 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-12832, nbisL1-mrna-12852 |
| Salicaceae | Populus euphratica | 3 | populus_peu22623, populus_peu22631, populus_peu24054 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132603380 |
| Solanaceae | Solanum chilense | 1 | SOLCI004575100 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107023660 |
| Tamaricaceae | Reaumuria soongarica | 3 | gene_10556, gene_12979, gene_2073 |
| Tamaricaceae | Tamarix chinensis | 1 | TC05G2304 |
| Zosteraceae | Zostera marina | 1 | Zosma02g07210.v3.1 |