Basic Information
Locus ID:
nbisL1-mrna-272
Species & Taxonomic ID:
Hibiscus hamabo Siebold & Zucc. & 1841
Description:
Leucine-rich repeat receptor-like protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 2296609 | 2304535 | + | nbisL1-mrna-272 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.39 | 117,241.59 Da | 37.40 | 99.80 | -0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13855 | Leucine rich repeat | 269 | 327 | 3.3E-7 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 29 | 71 | 9.8E-7 | IPR013210 |
| Pfam | PF13855 | Leucine rich repeat | 101 | 159 | 1.2E-6 | IPR001611 |
| Pfam | PF00069 | Protein kinase domain | 704 | 933 | 8.4E-17 | IPR000719 |
| SUPERFAMILY | SSF52058 | L domain-like | 308 | 623 | 4.42E-52 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 51 | 381 | 2.79E-59 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 703 | 935 | 1.64E-38 | IPR011009 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 26 | 189 | 2.6E-40 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 293 | 627 | 9.1E-91 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 190 | 291 | 2.4E-27 | IPR032675 |
| Gene3D | G3DSA:1.10.238.10 | - | 1012 | 1062 | 8.9E-8 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 702 | 945 | 3.2E-38 | - |
| SMART | SM00369 | LRR_typ_2 | 553 | 576 | 48.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 339 | 363 | 160.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 195 | 219 | 130.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 123 | 147 | 63.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 267 | 290 | 36.0 | IPR003591 |
| SMART | SM00220 | serkin_6 | 695 | 935 | 1.9E-6 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 669 | 950 | 18.138882 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 806 | 818 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G51350.1 | Leucine-rich repeat transmembrane protein kinase family protein. | 0 |
| RefSeq | XP_039031815.1 | leucine-rich repeat receptor-like protein kinase TDR [Hibiscus syriacus] | 0 |
| Q9LVP0 | Probable leucine-rich repeat receptor-like protein kinase At5g63930 OS=Arabidopsis thaliana OX=3702 GN=At5g63930 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6A2XJ14 | Putative lipid binding protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00111641pilonHSYRG00024 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_8913 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah014172 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_7g172330 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg1600, Sbi_jg34960 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg3150 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00003349 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl72772, Sgl76310 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000009288, gene:ENSEOMG00000033946 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.8AG0023440, CQ.Regalona.r1.8BG0018920 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30179450 |
| Apiaceae | Apium graveolens | 1 | Ag2G00449 |
| Asteraceae | Flaveria trinervia | 2 | Ftri14G00365, Ftri7G17717 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G51350.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10005775m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g06380.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB08g070710.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G2507 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G2644 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-272 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG07.175 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00015559 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb6G31990 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG04.1111, evm.TU.LG05.1654 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_10_RagTag.154 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-13939 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-21260 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-16586 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000033l.96 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00014990 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-16673 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-14542 |
| Salicaceae | Populus euphratica | 2 | populus_peu05639, populus_peu12278 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132603054 |
| Solanaceae | Solanum chilense | 1 | SOLCI000899100 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107025774 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.12325_chr02_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC10G1097 |