Basic Information
Locus ID:
nbisL1-mrna-27172
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
belongs to the protein kinase superfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 22603515 | 22607428 | - | nbisL1-mrna-27172 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.20 | 50,334.47 Da | 42.89 | 86.22 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14134 | PKc_CLK | 86 | 426 | 0.0 | - |
| Pfam | PF00069 | Protein kinase domain | 99 | 426 | 5.9E-52 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 86 | 430 | 1.09E-80 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 153 | 426 | 1.9E-111 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 86 | 179 | 1.9E-111 | - |
| SMART | SM00220 | serkin_6 | 99 | 426 | 5.2E-77 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 99 | 426 | 39.043068 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 105 | 135 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 220 | 232 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G24740.1 | FUS3-complementing gene 2. a LAMMER-type protein kinase that co-precipitates with serine/arginine-rich (SR) proteins in vitro, interaction modulated by phosphorylation of the proteins. | 0 |
| RefSeq | XP_021631220.1 | serine/threonine-protein kinase AFC2 isoform X1 [Manihot esculenta] | 0 |
| P51567 | Serine/threonine-protein kinase AFC2 OS=Arabidopsis thaliana OX=3702 GN=AFC2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2C9UT07 | Protein kinase domain-containing protein OS=Manihot esculenta OX=3983 GN=MANES_12G020700 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology