Basic Information
Locus ID:
nbisL1-mrna-27025
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
ABC transporter C family member
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 21279821 | 21292381 | + | nbisL1-mrna-27025 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.87 | 183,928.06 Da | 36.11 | 103.04 | 0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 831 | 1105 | 1.32415E-65 | IPR044726 |
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 277 | 513 | 4.05765E-85 | IPR044746 |
| CDD | cd03244 | ABCC_MRP_domain2 | 1128 | 1344 | 2.374E-120 | - |
| CDD | cd03250 | ABCC_MRP_domain1 | 538 | 708 | 1.25617E-81 | - |
| Pfam | PF00044 | Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain | 1369 | 1466 | 2.8E-28 | IPR020828 |
| Pfam | PF02800 | Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain | 1472 | 1626 | 4.0E-68 | IPR020829 |
| Pfam | PF00664 | ABC transporter transmembrane region | 835 | 1057 | 5.0E-18 | IPR011527 |
| Pfam | PF00664 | ABC transporter transmembrane region | 285 | 492 | 3.0E-23 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 1147 | 1291 | 6.2E-32 | IPR003439 |
| Pfam | PF00005 | ABC transporter | 564 | 695 | 4.6E-17 | IPR003439 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 833 | 1110 | 1.44E-42 | IPR036640 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 271 | 520 | 3.92E-28 | IPR036640 |
| SUPERFAMILY | SSF55347 | Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain | 1470 | 1626 | 1.93E-69 | - |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 564 | 711 | 1.74E-35 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1120 | 1352 | 5.24E-65 | IPR027417 |
| SUPERFAMILY | SSF51735 | NAD(P)-binding Rossmann-fold domains | 1369 | 1474 | 4.4E-35 | IPR036291 |
| Gene3D | G3DSA:3.40.50.300 | - | 521 | 718 | 1.8E-47 | IPR027417 |
| Gene3D | G3DSA:3.30.360.10 | Dihydrodipicolinate Reductase; domain 2 | 1467 | 1628 | 1.2E-82 | - |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 257 | 520 | 3.7E-43 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 798 | 1111 | 8.1E-46 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 1113 | 1362 | 7.7E-79 | IPR027417 |
| SMART | SM00846 | gp_dh_n_7 | 1367 | 1484 | 6.8E-37 | IPR020828 |
| SMART | SM00382 | AAA_5 | 569 | 729 | 3.5E-7 | IPR003593 |
| SMART | SM00382 | AAA_5 | 1156 | 1339 | 1.4E-11 | IPR003593 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 833 | 1093 | 29.439377 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 540 | 774 | 15.046164 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 273 | 505 | 30.804583 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1130 | 1360 | 17.65386 | IPR003439 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 668 | 682 | - | IPR017871 |
| PRINTS | PR00078 | Glyceraldehyde-3-phosphate dehydrogenase signature | 1485 | 1501 | 4.3E-25 | IPR020831 |
| PRINTS | PR00078 | Glyceraldehyde-3-phosphate dehydrogenase signature | 1542 | 1559 | 4.3E-25 | IPR020831 |
| PRINTS | PR00078 | Glyceraldehyde-3-phosphate dehydrogenase signature | 1582 | 1597 | 4.3E-25 | IPR020831 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13080.1 | multidrug resistance-associated protein 3. encodes an ATP-dependent MRP-like ABC transporter able to transport glutathione-conjugates as well as chlorophyll catabolites. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. | 0 |
| RefSeq | XP_034914533.1 | putative ABC transporter C family member 15 [Populus alba] | 0 |
| Q9LK64 | ABC transporter C family member 3 OS=Arabidopsis thaliana OX=3702 GN=ABCC3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A4S4EQS0 | ABC-type xenobiotic transporter OS=Camellia sinensis var. sinensis OX=542762 GN=TEA_025886 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology