Basic Information
Locus ID:
nbisL1-mrna-2699
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Short Name:
CPK24
Description:
Calcium-dependent protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000060F_pilon | 4791185 | 4793803 | - | nbisL1-mrna-2699 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.24 | 52,978.61 Da | 34.00 | 81.53 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00051 | EFh | 364 | 427 | 5.03843E-16 | IPR002048 |
| Pfam | PF00069 | Protein kinase domain | 57 | 213 | 2.4E-43 | IPR000719 |
| Pfam | PF13499 | EF-hand domain pair | 364 | 427 | 5.0E-12 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 293 | 352 | 1.4E-9 | IPR002048 |
| SUPERFAMILY | SSF47473 | EF-hand | 281 | 427 | 2.21E-39 | IPR011992 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 43 | 264 | 3.51E-57 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 49 | 211 | 9.4E-50 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 355 | 462 | 9.7E-19 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 212 | 269 | 1.9E-9 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 274 | 354 | 8.0E-22 | - |
| SMART | SM00054 | efh_1 | 328 | 356 | 0.44 | IPR002048 |
| SMART | SM00054 | efh_1 | 292 | 320 | 1.3E-4 | IPR002048 |
| SMART | SM00220 | serkin_6 | 57 | 267 | 1.8E-44 | IPR000719 |
| SMART | SM00054 | efh_1 | 364 | 392 | 3.1E-4 | IPR002048 |
| SMART | SM00054 | efh_1 | 401 | 429 | 8.0E-5 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 324 | 359 | 8.320626 | IPR002048 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 57 | 358 | 27.933744 | IPR000719 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 360 | 395 | 12.755995 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 288 | 323 | 14.84815 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 397 | 432 | 13.983393 | IPR002048 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 63 | 86 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 177 | 189 | - | IPR008271 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 410 | 422 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 337 | 349 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 373 | 385 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 301 | 313 | - | IPR018247 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 28 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G31500.1 | calcium-dependent protein kinase 24. member of Calcium Dependent Protein Kinase | 0 |
| RefSeq | XP_002533526.1 | calcium-dependent protein kinase 24 [Ricinus communis] | 0 |
| Q9SIQ7 | Calcium-dependent protein kinase 24 OS=Arabidopsis thaliana OX=3702 GN=CPK24 PE=2 SV=1 | 0 | |
| TrEMBL | B9T5K7 | Calcium-dependent protein kinase, putative OS=Ricinus communis OX=3988 GN=RCOM_1008260 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Apiaceae | Apium graveolens | 2 | Ag1G00022, AgUnG00188 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-2699 |