Basic Information
Locus ID:
nbisL1-mrna-26973
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
Belongs to the NPH3 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 20792019 | 20806322 | - | nbisL1-mrna-26973 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.83 | 70,942.18 Da | 58.07 | 88.59 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03000 | NPH3 family | 220 | 502 | 1.4E-95 | IPR027356 |
| SUPERFAMILY | SSF54695 | POZ domain | 33 | 126 | 3.77E-16 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 21 | 129 | 7.9E-10 | IPR011333 |
| ProSiteProfiles | PS51649 | NPH3 domain profile. | 219 | 526 | 93.421608 | IPR027356 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 378 | 399 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G67900.1 | Phototropic-responsive NPH3 family protein. | 0 |
| RefSeq | XP_021657420.1 | BTB/POZ domain-containing protein At1g67900-like isoform X2 [Hevea brasiliensis] | 0 |
| Q9C9V6 | BTB/POZ domain-containing protein At1g67900 OS=Arabidopsis thaliana OX=3702 GN=At1g67900 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2LJX7 | NPH3 domain-containing protein OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg34596, jg5525, jg7011, jg9513 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_18105 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah013680 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g148440 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg42837, Sbi_jg45462 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg11314 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00002491 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl35224, Sgl40610 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000002919, gene:ENSEOMG00000013525 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.6AG0004560, CQ.Regalona.r1.6BG0004640 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30220150 |
| Apiaceae | Apium graveolens | 5 | Ag1G01273, Ag5G02245, Ag6G00301, Ag7G00953, Ag8G02235 |
| Arecaceae | Cocos nucifera | 1 | scaffold026573G000010 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103698176 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_09.1628.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri13G15790, Ftri3G29162, Ftri5G21690 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G67900.1, AT3G26490.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10003883m.g.v1.0, Thhalv10019709m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp2g15600.v2.2, Sp5g22910.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g066810.2N, BniB03g042350.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq07G1346 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl07G1425 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno07g12530 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate09g00600 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-11082, nbisL1-mrna-11083 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG03.616 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00022313 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb0G37487, Lb1G00847, Lb6G30069 |
| Poaceae | Echinochloa crus-galli | 8 | AH01.4049, AH07.2445, BH07.2254, BH09.1479, CH03.721 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_2AG0136050, gene-QOZ80_2BG0191590 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.6HG0590910.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_023412 |
| Poaceae | Oryza coarctata | 4 | Oco03G014250, Oco04G014580, Oco07G008560, Oco08G008470 |
| Poaceae | Oryza sativa | 2 | LOC_Os02g38120.1, LOC_Os04g40100.1 |
| Poaceae | Paspalum vaginatum | 3 | gene-BS78_04G181200, gene-BS78_04G182300 ... |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0204437 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr06G008560, Chr09G012740, Chr13G008620, Chr23G010590 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel6E01G410000 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC6AG032350, gene_TRIDC6BG038710 |
| Poaceae | Triticum aestivum | 3 | TraesCS6A02G208800.2, TraesCS6B02G237800.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb079670_P001, Zm00001eb183690_P001 ... |
| Poaceae | Zoysia japonica | 3 | nbis-gene-18651, nbis-gene-29765, nbis-gene-7407 |
| Poaceae | Zoysia macrostachya | 3 | Zma_g13805, Zma_g16600, Zma_g21459 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG03.459, evm.TU.LG12.1252, evm.TU.LG13.156 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc05g02710 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_15_RagTag.789, evm.TU.Scaffold_17_RagTag.191 |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-23147, nbisL1-mrna-26973, nbisL1-mrna-27163 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-12675, nbisL1-mrna-6717 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-15611 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000001l.427, evm.TU.utg000013l.133 |
| Rhizophoraceae | Kandelia obovata | 3 | Maker00002364, Maker00002574, Maker00006522 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-11233, nbisL1-mrna-7043 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-15903, nbisL1-mrna-17728 |
| Salicaceae | Populus euphratica | 2 | populus_peu07709, populus_peu21761 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132614938, gene-LOC132641146 |
| Solanaceae | Solanum chilense | 1 | SOLCI007256600 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107020643 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.22566_chr10_-, STRG.9116_chr03_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC11G0858 |