Basic Information
Locus ID:
nbisL1-mrna-26840
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
Zinc knuckle (CCHC-type) family protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 19557669 | 19567336 | + | nbisL1-mrna-26840 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.86 | 52,400.82 Da | 60.86 | 67.29 | -0.78 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00195 | UBCc | 7 | 107 | 5.37526E-49 | IPR000608 |
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 8 | 107 | 2.2E-33 | IPR000608 |
| SUPERFAMILY | SSF57756 | Retrovirus zinc finger-like domains | 322 | 369 | 1.9E-7 | IPR036875 |
| SUPERFAMILY | SSF54495 | UBC-like | 1 | 107 | 4.7E-40 | IPR016135 |
| Gene3D | G3DSA:4.10.60.10 | - | 378 | 444 | 1.1E-6 | - |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 1 | 125 | 9.7E-46 | IPR016135 |
| Gene3D | G3DSA:4.10.60.10 | - | 322 | 377 | 1.3E-7 | - |
| SMART | SM00343 | c2hcfinal6 | 420 | 436 | 0.32 | IPR001878 |
| SMART | SM00212 | ubc_7 | 7 | 152 | 1.8E-29 | - |
| SMART | SM00343 | c2hcfinal6 | 324 | 340 | 0.3 | IPR001878 |
| SMART | SM00343 | c2hcfinal6 | 382 | 398 | 1.3 | IPR001878 |
| SMART | SM00343 | c2hcfinal6 | 351 | 367 | 0.064 | IPR001878 |
| ProSiteProfiles | PS50158 | Zinc finger CCHC-type profile. | 351 | 367 | 8.696716 | IPR001878 |
| ProSiteProfiles | PS50158 | Zinc finger CCHC-type profile. | 325 | 340 | 9.356029 | IPR001878 |
| ProSiteProfiles | PS50127 | Ubiquitin-conjugating (UBC) core domain profile. | 4 | 152 | 34.644844 | IPR000608 |
| Coils | Coil | Coil | 214 | 234 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G20220.1 | zinc knuckle (CCHC-type) family protein. | 0 |
| RefSeq | XP_021664939.1 | uncharacterized protein LOC110653552 [Hevea brasiliensis] | 0 |
| P25865 | Ubiquitin-conjugating enzyme E2 1 OS=Arabidopsis thaliana OX=3702 GN=UBC1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1Q3DDU4 | DNA-binding protein HEXBP-like OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_34044 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg34737 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_18211 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah014055 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg43134, Sbi_jg45733 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg11582 |
| Amaranthaceae | Suaeda aralocaspica | 3 | GOSA_00026544, GOSA_00027624, GOSA_00027629 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl35991, Sgl41292, Sgl41323 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000003775, gene:ENSEOMG00000012493 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.6AG0001720, CQ.Regalona.r1.6BG0001820 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30220010 |
| Apiaceae | Apium graveolens | 2 | AgUnG00595, AgUnG00596 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103696007 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_03.2968.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri11G06813 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G20220.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10013726m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g24190.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB02g042540.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq07G0053 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl07G0042 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno01g12890 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g33330 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00027230, Pov_00036096 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb1G01215, Lb1G01221 |
| Poaceae | Echinochloa crus-galli | 3 | AH02.2966, BH02.3049, CH02.3475 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0031050, gene-QOZ80_1BG0081000 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0284860.1 |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_054897, gene-QYE76_054922, gene-QYE76_054923 |
| Poaceae | Oryza coarctata | 2 | Oco01G018690, Oco02G019090 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g51710.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_02G033300, gene-BS78_03G255400 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0602873, Pt_Chr0602917 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr02G011360, Chr05G022310, Chr0G030520 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G419200 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG037200, gene_TRIDC3BG041600 |
| Poaceae | Triticum aestivum | 2 | TraesCS3B02G277000.1, TraesCS3D02G248300.1 |
| Poaceae | Zea mays | 1 | Zm00001eb361470_P005 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-26289 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g11008 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g23970 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_15_RagTag.660 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-26840 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-18905 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-15720 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000001l.344 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00002672 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-11318 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-17838 |
| Salicaceae | Populus euphratica | 1 | populus_peu21340 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132641522 |
| Solanaceae | Solanum chilense | 1 | SOLCI002991100 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107019830 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.25794_chr11_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC03G0985 |
| Zosteraceae | Zostera marina | 1 | Zosma05g24760.v3.1 |