Basic Information
Locus ID:
nbisL1-mrna-2684
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 002177F_pilon | 4495183 | 4498685 | + | nbisL1-mrna-2684 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.85 | 42,840.15 Da | 37.21 | 80.40 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 122 | 183 | 1.0E-4 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 109 | 194 | 5.49E-12 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 67 | 189 | 1.6E-8 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 120 | 189 | 5.4E-6 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 119 | 193 | 11.110626 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 347 | 398 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 347 | 361 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G17720.1 | RNA-binding (RRM/RBD/RNP motifs) family protein. | 0 |
| RefSeq | XP_021293178.1 | binding partner of ACD11 1 [Herrania umbratica] | 0 |
| Q9LFD5 | Binding partner of ACD11 1 OS=Arabidopsis thaliana OX=3702 GN=BPA1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1Q3D159 | RRM_1 domain-containing protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_29608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology