Basic Information
Locus ID:
nbisL1-mrna-26755
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Short Name:
WRKY4
Description:
WRKY transcription factor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 18644135 | 18649921 | + | nbisL1-mrna-26755 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.71 | 55,378.60 Da | 55.14 | 58.66 | -0.70 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03106 | WRKY DNA -binding domain | 238 | 293 | 2.3E-25 | IPR003657 |
| Pfam | PF03106 | WRKY DNA -binding domain | 410 | 467 | 2.3E-25 | IPR003657 |
| SUPERFAMILY | SSF118290 | WRKY DNA-binding domain | 236 | 295 | 4.32E-25 | IPR036576 |
| SUPERFAMILY | SSF118290 | WRKY DNA-binding domain | 401 | 469 | 2.35E-29 | IPR036576 |
| Gene3D | G3DSA:2.20.25.80 | WRKY domain | 221 | 296 | 2.4E-27 | IPR036576 |
| Gene3D | G3DSA:2.20.25.80 | WRKY domain | 394 | 470 | 6.8E-36 | IPR036576 |
| SMART | SM00774 | WRKY_cls | 409 | 468 | 6.2E-40 | IPR003657 |
| SMART | SM00774 | WRKY_cls | 236 | 294 | 1.5E-35 | IPR003657 |
| ProSiteProfiles | PS50811 | WRKY domain profile. | 231 | 295 | 22.618574 | IPR003657 |
| ProSiteProfiles | PS50811 | WRKY domain profile. | 404 | 469 | 38.181931 | IPR003657 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 367 | 382 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 30 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 286 | 305 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 477 | 514 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 317 | 388 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G13960.1 | WRKY DNA-binding protein 4. Encodes WRKY DNA-binding protein 4 (WRKY4). | 0 |
| RefSeq | XP_021613186.1 | probable WRKY transcription factor 3 [Manihot esculenta] | 0 |
| Q9XI90 | Probable WRKY transcription factor 4 OS=Arabidopsis thaliana OX=3702 GN=WRKY4 PE=1 SV=2 | 0 | |
| TrEMBL | A0A2C9VWJ7 | WRKY transcription factor 3 OS=Manihot esculenta OX=3983 GN=MANES_05G106900 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology