Basic Information
Locus ID:
nbisL1-mrna-26752
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
Mitotic checkpoint protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 18607865 | 18612540 | + | nbisL1-mrna-26752 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.02 | 36,327.16 Da | 43.66 | 79.10 | -0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 11 | 297 | 3.2E-33 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 4 | 322 | 6.3E-60 | IPR015943 |
| SMART | SM00320 | WD40_4 | 45 | 84 | 80.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 3 | 42 | 0.58 | IPR001680 |
| SMART | SM00320 | WD40_4 | 214 | 263 | 1.8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 87 | 125 | 1.4 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 93 | 134 | 9.305395 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 230 | 272 | 10.14085 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 112 | 126 | - | IPR019775 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G69400.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_034932193.1 | - | 0 |
| F4I241 | Mitotic checkpoint protein BUB3.3 OS=Arabidopsis thaliana OX=3702 GN=BUB3.3 PE=2 SV=1 | 0 | |
| TrEMBL | A0A4U5Q0A8 | Mitotic checkpoint protein BUB3.3-like OS=Populus alba OX=43335 GN=D5086_0000157220 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg28605, jg30205, jg9294 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_11170, gene_3829 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah013075, Ah015761 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_6g153130, BVRB_8g189660 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg25217, Sbi_jg42998, Sbi_jg45606, Sbi_jg9059 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg11451, Seu_jg19527 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00002080, GOSA_00011285 |
| Amaranthaceae | Suaeda glauca | 5 | Sgl35730, Sgl35749, Sgl41047, Sgl43381, Sgl48184 |
| Amaranthaceae | Chenopodium album | 7 | gene:ENSEOMG00000002928, gene:ENSEOMG00000011133 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.6BG0000350, CQ.Regalona.r1.8AG0011850 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30106460, pistato.v30227270 |
| Apiaceae | Apium graveolens | 3 | Ag1G00844, Ag1G01450, Ag7G01300 |
| Arecaceae | Cocos nucifera | 1 | COCNU_05G003030 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103705293, gene-LOC120107817 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_01.1494.V1.1, AsparagusV1_08.1260.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri14G11853, Ftri9G34027 |
| Brassicaceae | Arabidopsis thaliana | 3 | AT1G49910.1, AT1G69400.1, AT3G19590.1 |
| Brassicaceae | Eutrema salsugineum | 4 | Thhalv10009106m.g.v1.0, Thhalv10011632m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 3 | Sp1g36790.v2.2, Sp3g17630.v2.2, Sp5g24450.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB02g030470.2N, BniB05g066350.2N, BniB07g005560.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq07G1200, Ceq09G0277 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl07G1264, Cgl09G0312 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno02g19220, gene.Cymno11g04180 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0486s00003.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 3 | gene.Thate09g05260, gene.Thate09g06100, gene.Thate09g06110 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-11153 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG03.323, evm.TU.LG08.597 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00002328, Pov_00012168 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb6G30782 |
| Poaceae | Echinochloa crus-galli | 5 | AH01.3205, BH01.3567, BH01.661, CH01.3779, Contig309.24 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0229240, gene-QOZ80_3BG0274340 |
| Poaceae | Hordeum vulgare | 3 | HORVU.MOREX.r3.2HG0129480.1, HORVU.MOREX.r3.4HG0396550.1 ... |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_016440, gene-QYE76_040006 |
| Poaceae | Oryza coarctata | 5 | Oco05G016690, Oco05G024110, Oco06G017310, Oco06G025020 ... |
| Poaceae | Oryza sativa | 3 | LOC_Os03g33580.1, LOC_Os03g55140.1, LOC_Os07g39950.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G315500 |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0105121, Pt_Chr0107257, Pt_Chr0107284, Pt_Chr0304687 |
| Poaceae | Sporobolus alterniflorus | 6 | Chr01G004730, Chr04G013860, Chr04G029010, Chr07G013300 ... |
| Poaceae | Thinopyrum elongatum | 3 | Tel2E01G356600, Tel4E01G420800, Tel5E01G629700 |
| Poaceae | Triticum dicoccoides | 7 | gene_TRIDC2AG024910, gene_TRIDC2AG024920 ... |
| Poaceae | Triticum aestivum | 9 | TraesCS2A02G194000.1, TraesCS2B02G212800.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb011600_P001, Zm00001eb057920_P002 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-16224, nbis-gene-43500 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g2750, Zma_g3401 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG01.852, evm.TU.LG01.853, evm.TU.LG04.2596 ... |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc02g01220, gene.Posoc04g08380 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_15_RagTag.584, evm.TU.Scaffold_2_RagTag.405 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-26752, nbisL1-mrna-4790 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-14474, nbisL1-mrna-5813 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-15785, nbisL1-mrna-9751 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000001l.294, evm.TU.utg000009l.717 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00002538, Maker00005014 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-11370, nbisL1-mrna-2548 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-16495, nbisL1-mrna-23491 |
| Salicaceae | Populus euphratica | 4 | populus_peu01609, populus_peu06768, populus_peu20665 ... |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132598949, gene-LOC132642009 |
| Solanaceae | Solanum chilense | 2 | SOLCI003636500, SOLCI005208300 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107019024, gene-LOC107032384 |
| Tamaricaceae | Reaumuria soongarica | 2 | gene_13660, gene_8247 |
| Tamaricaceae | Tamarix chinensis | 2 | TC01G3016, TC10G0785 |
| Zosteraceae | Zostera marina | 2 | Zosma05g27600.v3.1, Zosma06g10290.v3.1 |