Basic Information
Locus ID:
nbisL1-mrna-2673
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Short Name:
PDC3
Description:
Belongs to the TPP enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 10956655 | 10959029 | - | nbisL1-mrna-2673 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.91 | 63,526.88 Da | 31.27 | 92.19 | 0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02005 | TPP_PDC_IPDC | 389 | 571 | 5.73808E-90 | - |
| CDD | cd07038 | TPP_PYR_PDC_IPDC_like | 30 | 189 | 2.9719E-90 | - |
| Pfam | PF00205 | Thiamine pyrophosphate enzyme, central domain | 224 | 333 | 6.4E-19 | IPR012000 |
| Pfam | PF02775 | Thiamine pyrophosphate enzyme, C-terminal TPP binding domain | 434 | 559 | 8.4E-15 | IPR011766 |
| Pfam | PF02776 | Thiamine pyrophosphate enzyme, N-terminal TPP binding domain | 27 | 193 | 4.7E-35 | IPR012001 |
| SUPERFAMILY | SSF52467 | DHS-like NAD/FAD-binding domain | 219 | 367 | 4.8E-31 | IPR029035 |
| SUPERFAMILY | SSF52518 | Thiamin diphosphate-binding fold (THDP-binding) | 27 | 201 | 1.03E-43 | IPR029061 |
| SUPERFAMILY | SSF52518 | Thiamin diphosphate-binding fold (THDP-binding) | 389 | 583 | 1.08E-42 | IPR029061 |
| Gene3D | G3DSA:3.40.50.970 | - | 382 | 573 | 3.4E-57 | - |
| Gene3D | G3DSA:3.40.50.970 | - | 24 | 200 | 3.2E-60 | - |
| Gene3D | G3DSA:3.40.50.1220 | - | 214 | 376 | 5.4E-39 | - |
| PIRSF | PIRSF036565 | Pyruvt_ip_decrb | 22 | 583 | 3.6E-209 | IPR012110 |
Gene Ontology
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G54960.1 | pyruvate decarboxylase-2. pyruvate decarboxylase-2 | 0 |
| RefSeq | XP_021289381.1 | pyruvate decarboxylase 2 [Herrania umbratica] | 0 |
| Q9FFT4 | Pyruvate decarboxylase 2 OS=Arabidopsis thaliana OX=3702 GN=PDC2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2P2JA13 | pyruvate decarboxylase OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology