Basic Information
Locus ID:
nbisL1-mrna-26663
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
Heat shock protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 17436619 | 17443446 | + | nbisL1-mrna-26663 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.96 | 93,935.88 Da | 42.80 | 82.24 | -0.54 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16927 | HATPase_Hsp90-like | 98 | 319 | 9.03178E-95 | - |
| Pfam | PF00183 | Hsp90 protein | 301 | 798 | 2.9E-191 | IPR001404 |
| Pfam | PF02518 | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase | 112 | 270 | 4.7E-12 | IPR003594 |
| SUPERFAMILY | SSF55874 | ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase | 89 | 329 | 1.14E-58 | IPR036890 |
| SUPERFAMILY | SSF110942 | HSP90 C-terminal domain | 652 | 773 | 1.83E-33 | IPR037196 |
| SUPERFAMILY | SSF54211 | Ribosomal protein S5 domain 2-like | 372 | 630 | 5.76E-89 | IPR020568 |
| Gene3D | G3DSA:1.20.120.790 | - | 634 | 777 | 1.6E-52 | IPR037196 |
| Gene3D | G3DSA:3.30.230.80 | - | 370 | 547 | 7.9E-73 | - |
| Gene3D | G3DSA:3.40.50.11260 | - | 548 | 633 | 2.9E-31 | - |
| Gene3D | G3DSA:3.30.565.10 | - | 81 | 342 | 4.1E-86 | IPR036890 |
| SMART | SM00387 | HKATPase_4 | 111 | 273 | 3.0E-5 | IPR003594 |
| PIRSF | PIRSF002583 | HSP90_HTPG | 67 | 816 | 1.3E-233 | IPR001404 |
| ProSitePatterns | PS00298 | Heat shock hsp90 proteins family signature. | 109 | 118 | - | IPR019805 |
| PRINTS | PR00775 | 90kDa heat shock protein signature | 177 | 194 | 3.0E-54 | IPR020575 |
| PRINTS | PR00775 | 90kDa heat shock protein signature | 159 | 176 | 3.0E-54 | IPR020575 |
| PRINTS | PR00775 | 90kDa heat shock protein signature | 110 | 132 | 3.0E-54 | IPR020575 |
| PRINTS | PR00775 | 90kDa heat shock protein signature | 89 | 109 | 3.0E-54 | IPR020575 |
| PRINTS | PR00775 | 90kDa heat shock protein signature | 206 | 228 | 3.0E-54 | IPR020575 |
| PRINTS | PR00775 | 90kDa heat shock protein signature | 261 | 278 | 3.0E-54 | IPR020575 |
| Hamap | MF_00505 | Chaperone protein HtpG [htpG]. | 78 | 774 | 26.087799 | IPR001404 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 335 | 354 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 782 | 825 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G04030.1 | Chaperone protein htpG family protein. Encodes a chloroplast-targeted 90-kDa heat shock protein located in the stroma involved in red-light mediated deetiolation response. Mutants are resistant to chlorate, have elongated hypocotyls in light, and affect the expression of NR2, CAB, and RBCS but NOT NR1 and NiR. | 0 |
| RefSeq | XP_021615743.1 | heat shock protein 90-5, chloroplastic [Manihot esculenta] | 0 |
| Q9SIF2 | Heat shock protein 90-5, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=HSP90-5 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2KRL8 | Uncharacterized protein MANES_14G091600 OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology