Basic Information
Locus ID:
nbisL1-mrna-26651
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
recombinational repair
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 17252547 | 17265802 | - | nbisL1-mrna-26651 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.22 | 113,799.31 Da | 42.88 | 79.91 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18008 | DEXDc_SHPRH-like | 255 | 625 | 5.59604E-76 | - |
| CDD | cd18793 | SF2_C_SNF | 825 | 976 | 4.96103E-54 | - |
| Pfam | PF00176 | SNF2 family N-terminal domain | 275 | 702 | 1.3E-66 | IPR000330 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 867 | 966 | 6.7E-14 | IPR001650 |
| Pfam | PF13923 | Zinc finger, C3HC4 type (RING finger) | 739 | 776 | 3.1E-8 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 728 | 777 | 8.73E-13 | - |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 240 | 625 | 2.66E-42 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 633 | 1023 | 2.31E-54 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 640 | 1024 | 5.3E-64 | IPR027417 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 731 | 790 | 9.4E-13 | IPR013083 |
| Gene3D | G3DSA:3.40.50.10810 | - | 481 | 635 | 2.0E-31 | IPR038718 |
| Gene3D | G3DSA:3.40.50.10810 | - | 227 | 318 | 6.9E-11 | IPR038718 |
| Gene3D | G3DSA:3.40.50.10810 | - | 392 | 480 | 1.4E-9 | IPR038718 |
| SMART | SM00184 | ring_2 | 740 | 778 | 3.8E-6 | IPR001841 |
| SMART | SM00487 | ultradead3 | 251 | 604 | 9.3E-27 | IPR014001 |
| SMART | SM00490 | helicmild6 | 883 | 966 | 2.3E-16 | IPR001650 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 840 | 1019 | 13.342208 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 408 | 587 | 11.357882 | IPR014001 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 740 | 779 | 11.441815 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 755 | 764 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 499 | 519 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 9 | 31 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 38 | 68 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 305 | 328 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 68 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G50410.1 | SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related. | 0 |
| RefSeq | XP_021675592.1 | helicase-like transcription factor CHR28 [Hevea brasiliensis] | 0 |
| Q94BR5 | Helicase-like transcription factor CHR28 OS=Arabidopsis thaliana OX=3702 GN=CHR28 PE=1 SV=1 | 0 | |
| TrEMBL | A0A251L508 | Helicase-like transcription factor CHR28 OS=Manihot esculenta OX=3983 GN=MANES_04G162000 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology