Basic Information
Locus ID:
nbisL1-mrna-2661
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 10853007 | 10858108 | - | nbisL1-mrna-2661 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.51 | 59,159.18 Da | 43.82 | 113.30 | 0.54 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd13136 | MATE_DinF_like | 104 | 540 | 5.06536E-105 | IPR044644 |
| Pfam | PF01554 | MatE | 354 | 498 | 2.8E-10 | IPR002528 |
| Pfam | PF01554 | MatE | 200 | 292 | 7.4E-7 | IPR002528 |
| TIGRFAM | TIGR00797 | matE: MATE efflux family protein | 111 | 520 | 5.2E-89 | IPR002528 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 41 | 71 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 45 | 61 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G38330.1 | MATE efflux family protein. | 0 |
| RefSeq | XP_015579344.1 | protein DETOXIFICATION 44, chloroplastic isoform X1 [Ricinus communis] | 0 |
| Q84K71 | Protein DETOXIFICATION 44, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=DTX44 PE=2 SV=1 | 0 | |
| TrEMBL | B9SL10 | Protein DETOXIFICATION OS=Ricinus communis OX=3988 GN=RCOM_0848190 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology