Basic Information
Locus ID:
nbisL1-mrna-26520
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 15134034 | 15137765 | + | nbisL1-mrna-26520 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.76 | 102,561.84 Da | 35.33 | 86.81 | -0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 601 | 874 | 5.729E-100 | - |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 598 | 870 | 1.7E-48 | IPR001245 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 37 | 69 | 7.2E-4 | IPR013210 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 339 | 374 | 3.3E-4 | IPR013210 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 570 | 882 | 5.58E-81 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 50 | 444 | 4.17E-48 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 673 | 887 | 8.3E-59 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 561 | 672 | 5.4E-36 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 35 | 334 | 7.2E-77 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 336 | 461 | 3.7E-33 | IPR032675 |
| SMART | SM00369 | LRR_typ_2 | 399 | 423 | 51.0 | IPR003591 |
| SMART | SM00220 | serkin_6 | 595 | 875 | 2.6E-43 | IPR000719 |
| SMART | SM00369 | LRR_typ_2 | 118 | 141 | 0.086 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 291 | 318 | 170.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 193 | 216 | 230.0 | IPR003591 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 401 | 424 | 7.1113 | IPR001611 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 595 | 875 | 41.149033 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 601 | 623 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 720 | 732 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 915 | 947 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 459 | 493 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G66150.1 | transmembrane kinase 1. receptor-like transmembrane kinase I (TMK1) | 0 |
| RefSeq | XP_012072359.1 | - | 0 |
| P43298 | Receptor protein kinase TMK1 OS=Arabidopsis thaliana OX=3702 GN=TMK1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2L8F0 | Receptor protein kinase OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology