Basic Information
Locus ID:
nbisL1-mrna-26499
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
acetyltransferase component of pyruvate dehydrogenase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 14843337 | 14844185 | + | nbisL1-mrna-26499 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.25 | 9,440.00 Da | 59.07 | 137.93 | 0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF51230 | Single hybrid motif | 7 | 51 | 2.55E-5 | IPR011053 |
| Gene3D | G3DSA:2.40.50.100 | - | 2 | 55 | 4.7E-6 | - |
KEGG Pathway
Pathway:
ko00010 (Glycolysis / Gluconeogenesis)
map00010 (Glycolysis / Gluconeogenesis)
ko00020 (Citrate cycle (TCA cycle))
map00020 (Citrate cycle (TCA cycle))
ko00620 (Pyruvate metabolism)
map00620 (Pyruvate metabolism)
ko01100 (Metabolic pathways)
map01100 (Metabolic pathways)
ko01110 (Biosynthesis of secondary metabolites)
map01110 (Biosynthesis of secondary metabolites)
ko01120 (Microbial metabolism in diverse environments)
map01120 (Microbial metabolism in diverse environments)
ko01200 (Carbon metabolism)
map01200 (Carbon metabolism)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G25860.1 | 2-oxoacid dehydrogenases acyltransferase family protein. Nuclear encoded dihydrolipoamide S-acetyltransferase (LTA2) that encodes teh Pyruvate Decarboxylase E2 subunit. Mutant has embryo defect. | 0 |
| RefSeq | XP_044488786.1 | - | 0 |
| Q9SQI8 | Dihydrolipoyllysine-residue acetyltransferase component 4 of pyruvate dehydrogenase complex, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LTA2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2C9UKJ3 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000013134 |
| Arecaceae | Cocos nucifera | 2 | COCNU_03G001150, COCNU_14G007100 |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_01.1284.V1.1, AsparagusV1_05.1496.V1.1 ... |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate08g01930 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb1G01234, Lb2G15417 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr07G017130 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC5BG020310 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG07.1169 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-26499 |