Basic Information
Locus ID:
nbisL1-mrna-26411
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
SEC12-like protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 13438221 | 13443121 | - | nbisL1-mrna-26411 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.79 | 44,360.90 Da | 42.67 | 87.05 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12894 | Anaphase-promoting complex subunit 4 WD40 domain | 177 | 256 | 2.7E-6 | IPR024977 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 57 | 372 | 1.02E-36 | IPR011047 |
| Gene3D | G3DSA:2.130.10.10 | - | 64 | 380 | 2.4E-64 | IPR015943 |
| SMART | SM00320 | WD40_4 | 292 | 331 | 1.1 | IPR001680 |
| SMART | SM00320 | WD40_4 | 160 | 198 | 0.087 | IPR001680 |
| SMART | SM00320 | WD40_4 | 202 | 240 | 0.4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 334 | 374 | 1.4 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 215 | 249 | 9.071468 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 31 | 65 | - | - |
| Coils | Coil | Coil | 27 | 54 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G01470.1 | SEC12P-like 2 protein. Sec12p-like protein (GTP exchange protein) that functionally complements yeast sec12 null mutant. Protein is localized to the ER. | 0 |
| RefSeq | XP_021595766.1 | SEC12-like protein 2 [Manihot esculenta] | 0 |
| Q39221 | SEC12-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=STL2P PE=1 SV=4 | 0 | |
| TrEMBL | A0A2P2KSE6 | SEC12-like protein 2 isoform X2 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology