Basic Information
Locus ID:
nbisL1-mrna-2629
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
Ubiquitin-2 like Rad60 SUMO-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000060F_pilon | 4320348 | 4321435 | - | nbisL1-mrna-2629 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.56 | 9,831.27 Da | 25.82 | 68.64 | -0.56 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF11976 | Ubiquitin-2 like Rad60 SUMO-like | 11 | 81 | 4.7E-15 | IPR022617 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 4 | 87 | 5.18E-17 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 5 | 87 | 1.9E-22 | - |
| SMART | SM00213 | ubq_7 | 11 | 83 | 8.2E-4 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 11 | 87 | 11.638161 | IPR000626 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_039041309.1 | small ubiquitin-related modifier 1-like [Hibiscus syriacus] | 0 |
| TrEMBL | A0A6A2X161 | Small ubiquitin-related modifier OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00116951pilonHSYRG00812 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology