Basic Information
Locus ID:
nbisL1-mrna-26286
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
May participate in a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 11870573 | 11885606 | + | nbisL1-mrna-26286 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.92 | 71,080.19 Da | 45.83 | 85.60 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 95 | 130 | 2.9E-9 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 52 | 89 | 6.3E-8 | IPR001680 |
| Pfam | PF13925 | con80 domain of Katanin | 504 | 627 | 5.1E-40 | IPR028021 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 49 | 172 | 3.26E-27 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 41 | 253 | 2.1E-28 | IPR015943 |
| SMART | SM00320 | WD40_4 | 92 | 131 | 3.1E-11 | IPR001680 |
| SMART | SM00320 | WD40_4 | 50 | 89 | 1.4E-9 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 57 | 98 | 14.986489 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 99 | 131 | 13.315579 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 99 | 131 | 11.049229 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 57 | 91 | 11.787407 | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G08390.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_024462636.1 | katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.4 [Populus trichocarpa] | 0 |
| F4KB17 | Katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.3 OS=Arabidopsis thaliana OX=3702 GN=KTN80.3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2M719 | Katanin p80 WD40 repeat-containing subunit B1 homolog OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology