Basic Information
Locus ID:
nbisL1-mrna-2628
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 10599741 | 10602644 | - | nbisL1-mrna-2628 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.62 | 36,062.39 Da | 53.45 | 78.21 | -0.54 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | mobidb-lite | consensus disorder prediction | 311 | 330 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 92 | 112 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 38 | 85 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 37 | 116 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G51580.1 | 0 | |
| RefSeq | XP_021687451.1 | uncharacterized protein LOC110669900 [Hevea brasiliensis] | 0 |
| TrEMBL | A0A2P2K9U3 | Uncharacterized protein MANES_09G118000 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg10079, jg3165, jg34080 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_20427 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah031536 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_7g156950 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg2160, Sbi_jg34348 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg2614 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00005875 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl71117, Sgl74700 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000008372, gene:ENSEOMG00000037268 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.7AG0023050 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30178070, pistato.v30269210 |
| Apiaceae | Apium graveolens | 2 | Ag2G02651, Ag8G00018 |
| Arecaceae | Cocos nucifera | 2 | COCNU_04G004550, COCNU_12G006220 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103706253, gene-LOC103708905 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_02.369.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri10G30680, Ftri6G01578, Ftri9G09567 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G51580.2 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10010441m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g10690.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB02g074630.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G0887 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl08G0904 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno02g18290, gene.Cymno03g01890 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate02g08660, gene.Thate07g08950 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-11951, nbisL1-mrna-3186 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG01.868, evm.TU.LG02.1692 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00002595, Pov_00011612 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb4G25919 |
| Poaceae | Echinochloa crus-galli | 3 | AH05.2028, BH05.2163, CH05.2240 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_5AG0369580, gene-QOZ80_5BG0417010 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0070940.1 |
| Poaceae | Oryza coarctata | 2 | Oco09G012250, Oco10G012340 |
| Poaceae | Oryza sativa | 1 | LOC_Os05g40040.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_09G184100 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0504560, Pt_Chr0702125 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr18G012180, Chr22G005560 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G487000 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG044660, gene_TRIDC1BG050540 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G300800.1, TraesCS1B02G310800.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb290650_P001, Zm00001eb352040_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-14251, nbis-gene-25373 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g27000, Zma_g28447 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG03.2070, evm.TU.LG14.369 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g08670 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_2_RagTag.537 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-4656 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-2087 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-9650 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000009l.631 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00005885 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-2628 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-16616 |
| Salicaceae | Populus euphratica | 3 | populus_peu11511, populus_peu19154, populus_peu25264 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132631076, gene-LOC132640445 |
| Solanaceae | Solanum chilense | 2 | SOLCI003555700, SOLCI006470200 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107019095, gene-LOC107031781 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_6615 |
| Tamaricaceae | Tamarix chinensis | 1 | TC07G0982 |
| Zosteraceae | Zostera marina | 1 | Zosma04g25420.v3.1 |