Basic Information
Locus ID:
nbisL1-mrna-26234
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
PB1 domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 11346705 | 11354964 | + | nbisL1-mrna-26234 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.44 | 135,386.42 Da | 47.70 | 72.98 | -0.62 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd06410 | PB1_UP2 | 190 | 285 | 5.11458E-44 | - |
| Pfam | PF00564 | PB1 domain | 203 | 286 | 1.8E-20 | IPR000270 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 1038 | 1121 | 1.0E-12 | IPR001245 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 1026 | 1207 | 7.62E-35 | IPR011009 |
| SUPERFAMILY | SSF54277 | CAD & PB1 domains | 202 | 292 | 5.05E-22 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 1123 | 1228 | 5.8E-13 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 205 | 287 | 3.8E-12 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 1029 | 1122 | 9.4E-26 | - |
| SMART | SM00666 | PB1_new | 201 | 287 | 5.3E-30 | IPR000270 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1036 | 1230 | 13.799745 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 1042 | 1067 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 402 | 455 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 721 | 756 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 467 | 496 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G35050.1 | Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain. | 0 |
| RefSeq | XP_011018312.1 | PREDICTED: uncharacterized protein LOC105121394 [Populus euphratica] | 0 |
| O64768 | RAF-like serine/threonine-protein kinase 24 OS=Arabidopsis thaliana OX=3702 GN=RAF24 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2M006 | Uncharacterized protein LOC105121394 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology