Basic Information
Locus ID:
nbisL1-mrna-2621
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
high mobility group
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000060F_pilon | 4275011 | 4275680 | + | nbisL1-mrna-2621 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.40 | 21,233.17 Da | 50.18 | 54.28 | -1.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01390 | HMGB-UBF_HMG-box | 22 | 86 | 2.27037E-19 | - |
| Pfam | PF00505 | HMG (high mobility group) box | 22 | 89 | 8.0E-16 | IPR009071 |
| SUPERFAMILY | SSF47095 | HMG-box | 14 | 94 | 6.81E-23 | IPR036910 |
| Gene3D | G3DSA:1.10.30.10 | High mobility group box domain | 5 | 100 | 1.5E-22 | IPR036910 |
| SMART | SM00398 | hmgende2 | 21 | 90 | 1.5E-19 | IPR009071 |
| ProSiteProfiles | PS50118 | HMG boxes A and B DNA-binding domains profile. | 22 | 89 | 15.741228 | IPR009071 |
| PRINTS | PR00886 | High mobility group (HMG1/HMG2) protein signature | 73 | 93 | 5.1E-5 | - |
| PRINTS | PR00886 | High mobility group (HMG1/HMG2) protein signature | 54 | 73 | 5.1E-5 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 29 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 16 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 115 | 187 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 115 | 155 | - | - |
| Coils | Coil | Coil | 71 | 91 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G04880.1 | HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain. | 0 |
| RefSeq | XP_017975950.1 | PREDICTED: high mobility group B protein 15 isoform X2 [Theobroma cacao] | 0 |
| Q9MAT6 | High mobility group B protein 15 OS=Arabidopsis thaliana OX=3702 GN=HMGB15 PE=2 SV=1 | 0 | |
| TrEMBL | A0A061ELP2 | HMG box protein with ARID/BRIGHT DNA-binding domain isoform 2 OS=Theobroma cacao OX=3641 GN=TCM_020322 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology