Basic Information
Locus ID:
nbisL1-mrna-26199
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 11055518 | 11058485 | - | nbisL1-mrna-26199 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.97 | 25,302.74 Da | 56.75 | 82.06 | -0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16461 | RING-H2_EL5_like | 86 | 129 | 5.48981E-16 | - |
| Pfam | PF13639 | Ring finger domain | 86 | 129 | 2.5E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 79 | 135 | 4.54E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 56 | 134 | 4.7E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 87 | 128 | 6.2E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 87 | 129 | 12.415513 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 203 | 228 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G49230.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_021682582.1 | - | 0 |
| Q6NQG7 | RING-H2 finger protein ATL78 OS=Arabidopsis thaliana OX=3702 GN=ATL78 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6J1BEA4 | RING-H2 finger protein ATL38-like OS=Herrania umbratica OX=108875 GN=LOC110425911 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg1878, jg29660 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_1395, gene_9702 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah007122 |
| Amaranthaceae | Salicornia bigelovii | 5 | Sbi_jg35734, Sbi_jg4414, Sbi_jg49329, Sbi_jg7050, Sbi_jg758 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg3956, Seu_jg5842 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00000364, GOSA_00009728 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl11176, Sgl16574, Sgl25741, Sgl30874 |
| Amaranthaceae | Chenopodium album | 5 | gene:ENSEOMG00000014534, gene:ENSEOMG00000028666 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.1AG0005430, CQ.Regalona.r1.2BG0024190 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30003740, pistato.v30169980 |
| Apiaceae | Apium graveolens | 2 | Ag2G00771, Ag6G01615 |
| Arecaceae | Cocos nucifera | 1 | COCNU_07G007020 |
| Arecaceae | Phoenix dactylifera | 4 | gene-LOC103716862, gene-LOC103719848, gene-LOC103720886 ... |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_09.5.V1.1, AsparagusV1_10.1187.V1.1 |
| Asteraceae | Flaveria trinervia | 4 | Ftri15G22996, Ftri17G23225, Ftri3G09806, Ftri6G24096 |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq05G0633, Ceq05G1190 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl05G0651, Cgl05G1202 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno14g04600 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate06g11880, gene.Thate08g18260 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-6122 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG02.1246, evm.TU.LG04.940 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00032142, Pov_00040210 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb1G05762, Lb3G19131 |
| Poaceae | Echinochloa crus-galli | 13 | AH05.197, AH07.2022, AH07.2989, AH09.1984, BH04.278 ... |
| Poaceae | Eleusine coracana subsp. coracana | 9 | gene-QOZ80_2AG0132660, gene-QOZ80_2AG0140740 ... |
| Poaceae | Hordeum vulgare | 5 | HORVU.MOREX.r3.2HG0187030.1, HORVU.MOREX.r3.4HG0355390.1 ... |
| Poaceae | Lolium multiflorum | 8 | gene-QYE76_003011, gene-QYE76_003128, gene-QYE76_022684 ... |
| Poaceae | Oryza coarctata | 10 | Oco03G011450, Oco03G018060, Oco04G011870, Oco04G018820 ... |
| Poaceae | Oryza sativa | 4 | LOC_Os02g45390.1, LOC_Os04g48310.1, LOC_Os11g05300.1 ... |
| Poaceae | Paspalum vaginatum | 5 | gene-BS78_04G149800, gene-BS78_04G240900 ... |
| Poaceae | Puccinellia tenuiflora | 8 | Pt_Chr0103656, Pt_Chr0103674, Pt_Chr0307336, Pt_Chr0307364 ... |
| Poaceae | Sporobolus alterniflorus | 12 | Chr04G022160, Chr06G005180, Chr06G010710, Chr06G023880 ... |
| Poaceae | Thinopyrum elongatum | 5 | Tel2E01G691300, Tel4E01G208600, Tel5E01G235300 ... |
| Poaceae | Triticum dicoccoides | 9 | gene_TRIDC2AG057800, gene_TRIDC2BG060700 ... |
| Poaceae | Triticum aestivum | 15 | TraesCS2A02G399700.1, TraesCS2B02G417700.1 ... |
| Poaceae | Zea mays | 5 | Zm00001eb073580_P002, Zm00001eb092730_P001 ... |
| Poaceae | Zoysia japonica | 3 | nbis-gene-18907, nbis-gene-20838, nbis-gene-5600 |
| Poaceae | Zoysia macrostachya | 6 | Zma_g13611, Zma_g16402, Zma_g16867, Zma_g21809, Zma_g24733 ... |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG08.1485, evm.TU.LG19.1216, evm.TU.LG22.377 ... |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc05g22850, gene.Posoc06g11880 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_5_RagTag.320, evm.TU.Scaffold_9_RagTag.394 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-10897, nbisL1-mrna-26199 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-3398, nbisL1-mrna-7977 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-21811 |
| Rhizophoraceae | Kandelia candel | 3 | evm.TU.utg000003l.300, evm.TU.utg000004l.305 ... |
| Rhizophoraceae | Kandelia obovata | 3 | Maker00004080, Maker00009873, Maker00013272 |
| Rhizophoraceae | Rhizophora apiculata | 3 | nbisL1-mrna-3645, nbisL1-mrna-6884, nbisL1-mrna-9227 |
| Rhizophoraceae | Rhizophora mangle | 3 | nbisL1-mrna-12735, nbisL1-mrna-6987, nbisL1-mrna-7653 |
| Salicaceae | Populus euphratica | 4 | populus_peu06134, populus_peu19993, populus_peu27773 ... |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132615118, gene-LOC132640098, gene-LOC132645663 |
| Solanaceae | Solanum chilense | 3 | SOLCI001730600, SOLCI003539200, SOLCI003880300 |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107003319, gene-LOC107018791, gene-LOC107020669 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.32474_chr09_- |
| Tamaricaceae | Tamarix chinensis | 3 | TC02G1122, TC02G1127, TC11G1763 |
| Zosteraceae | Zostera marina | 1 | Zosma01g31510.v3.1 |