Basic Information
Locus ID:
nbisL1-mrna-2616
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
transcriptional corepressor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000060F_pilon | 4230963 | 4239906 | - | nbisL1-mrna-2616 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.09 | 84,331.40 Da | 42.35 | 72.87 | -0.50 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 489 | 774 | 1.12109E-64 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 658 | 691 | 7.9E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 743 | 774 | 0.23 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 575 | 611 | 1.8E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 533 | 567 | 1.2E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 496 | 525 | 4.8E-4 | IPR001680 |
| Pfam | PF08513 | LisH | 10 | 36 | 1.4E-7 | IPR006594 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 487 | 774 | 7.69E-65 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 624 | 774 | 4.5E-29 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 405 | 623 | 3.5E-35 | IPR015943 |
| SMART | SM00320 | WD40_4 | 653 | 691 | 2.8E-5 | IPR001680 |
| SMART | SM00667 | Lish | 8 | 40 | 5.3E-4 | IPR006594 |
| SMART | SM00320 | WD40_4 | 571 | 611 | 5.5E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 735 | 774 | 0.058 | IPR001680 |
| SMART | SM00320 | WD40_4 | 528 | 567 | 6.6E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 486 | 525 | 2.4E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 694 | 733 | 0.34 | IPR001680 |
| SMART | SM00320 | WD40_4 | 614 | 650 | 70.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 578 | 620 | 12.379869 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 493 | 528 | 9.071966 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 493 | 534 | 11.744925 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 535 | 567 | 10.15287 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 535 | 567 | 12.17936 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 742 | 774 | 10.021053 | - |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 8 | 40 | 9.630869 | IPR006594 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 578 | 612 | 9.678328 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 742 | 774 | 10.34136 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 660 | 700 | 9.305395 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 598 | 612 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 512 | 526 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 512 | 526 | 8.9E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 761 | 774 | 8.9E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 554 | 568 | 8.9E-5 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 327 | 393 | - | - |
| Coils | Coil | Coil | 78 | 105 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32700.6 | LEUNIG_homolog. Encodes a WD40 repeat and LUFS domain containing protein that is similar to LUG. Interacts physically with SEUSS and likely functions as part of a repressor complex that represses AG. | 0 |
| RefSeq | XP_015574101.1 | transcriptional corepressor LEUNIG_HOMOLOG isoform X2 [Ricinus communis] | 0 |
| O48847 | Transcriptional corepressor LEUNIG_HOMOLOG OS=Arabidopsis thaliana OX=3702 GN=LUH PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2MFZ5 | Transcriptional corepressor LEUNIG_HOMOLOG isoform X2 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology