Basic Information
Locus ID:
nbisL1-mrna-26145
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 10479233 | 10482161 | + | nbisL1-mrna-26145 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.35 | 69,132.41 Da | 41.16 | 101.02 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 251 | 293 | 8.97142E-29 | - |
| Pfam | PF04564 | U-box domain | 247 | 317 | 3.1E-21 | IPR003613 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 457 | 495 | 1.8E-6 | IPR000225 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 374 | 413 | 7.3E-11 | IPR000225 |
| SUPERFAMILY | SSF57850 | RING/U-box | 246 | 323 | 3.53E-31 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 343 | 624 | 1.22E-51 | IPR016024 |
| Gene3D | G3DSA:1.25.10.10 | - | 340 | 418 | 5.1E-14 | IPR011989 |
| Gene3D | G3DSA:1.25.10.10 | - | 523 | 626 | 1.4E-12 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 247 | 320 | 5.0E-31 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 419 | 522 | 1.3E-25 | IPR011989 |
| Gene3D | G3DSA:1.20.930.20 | - | 9 | 121 | 7.8E-12 | IPR036537 |
| SMART | SM00185 | arm_5 | 374 | 414 | 1.2E-6 | IPR000225 |
| SMART | SM00185 | arm_5 | 538 | 578 | 290.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 456 | 496 | 0.034 | IPR000225 |
| SMART | SM00185 | arm_5 | 415 | 455 | 0.038 | IPR000225 |
| SMART | SM00185 | arm_5 | 497 | 537 | 10.0 | IPR000225 |
| SMART | SM00504 | Ubox_2 | 250 | 313 | 2.2E-35 | IPR003613 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 385 | 427 | 14.4724 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 426 | 468 | 8.9424 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 508 | 545 | 8.9424 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 246 | 320 | 44.778698 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G54850.1 | plant U-box 14. Encodes a protein with a typical U-box domain followed by an Armadillo repeat region, a domain organization that is frequently found in plant U-box proteins. Displays ubiquitin ligase activity in vitro. | 0 |
| RefSeq | XP_021657630.1 | U-box domain-containing protein 14 [Hevea brasiliensis] | 0 |
| Q8VZ40 | U-box domain-containing protein 14 OS=Arabidopsis thaliana OX=3702 GN=PUB14 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2JW42 | RING-type E3 ubiquitin transferase OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology