Basic Information
Locus ID:
nbisL1-mrna-26110
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
belongs to the protein kinase superfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 10066446 | 10077205 | - | nbisL1-mrna-26110 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.40 | 18,915.70 Da | 42.37 | 82.29 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 2 | 91 | 1.5E-6 | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G29720.1 | Leucine-rich repeat transmembrane protein kinase. | 0 |
| RefSeq | XP_021672343.1 | cold-responsive protein kinase 1-like isoform X2 [Hevea brasiliensis] | 0 |
| Q9ASQ6 | Probable LRR receptor-like serine/threonine-protein kinase At1g29720 OS=Arabidopsis thaliana OX=3702 GN=RFK1 PE=2 SV=3 | 0 | |
| TrEMBL | A0A6A6K164 | Protein kinase domain-containing protein OS=Hevea brasiliensis OX=3981 GN=GH714_043727 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.8AG0004010, CQ.Regalona.r1.8BG0004180 |
| Apiaceae | Apium graveolens | 2 | Ag10G01027, Ag4G01609 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-31074, nbis-gene-47989 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g30175 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_9_RagTag.124 |
| Rhizophoraceae | Carallia pectinifolia | 4 | nbisL1-mrna-21773, nbisL1-mrna-21792, nbisL1-mrna-26110 ... |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-4668 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-4448 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-19434 |
| Salicaceae | Populus euphratica | 2 | populus_peu17329, populus_peu37223 |