Basic Information
Locus ID:
nbisL1-mrna-26051
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
Metal tolerance protein
Maps and Mapping Data
| Chromosome/Scaffold | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 9544876 | 9551611 | + | nbisL1-mrna-26051 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.52 | 51,763.60 Da | 45.88 | 93.73 | -0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01545 | Cation efflux family | 171 | 364 | 9.1E-32 | IPR002524 |
| Pfam | PF16916 | Dimerisation domain of Zinc Transporter | 380 | 444 | 9.3E-14 | IPR027470 |
| SUPERFAMILY | SSF161111 | Cation efflux protein transmembrane domain-like | 165 | 365 | 6.54E-42 | IPR027469 |
| SUPERFAMILY | SSF160240 | Cation efflux protein cytoplasmic domain-like | 368 | 445 | 3.27E-17 | IPR036837 |
| Gene3D | G3DSA:3.30.70.1350 | Cation efflux protein, cytoplasmic domain | 367 | 446 | 6.8E-19 | IPR036837 |
| Gene3D | G3DSA:1.20.1510.10 | Cation efflux protein transmembrane domain | 169 | 363 | 1.2E-42 | IPR027469 |
| TIGRFAM | TIGR01297 | CDF: cation diffusion facilitator family transporter | 170 | 445 | 5.7E-34 | IPR002524 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G39450.1 | Cation efflux family protein. Encodes a Golgi-localized manganese transporter that is involved in Mn tolerance. When expressed into yeast cells, this gene confer Mn<sup>2+</sup> and Cu<sup>2+</sup> tolerance. | 0 |
| RefSeq | XP_021626184.1 | metal tolerance protein 11 isoform X1 [Manihot esculenta] | 0 |
| O80632 | Metal tolerance protein 11 OS=Arabidopsis thaliana OX=3702 GN=MTP11 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2P2MI39 | Cation efflux protein/ zinc transporter OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology