Basic Information
Locus ID:
nbisL1-mrna-2604
Species & Taxonomic ID:
Hibiscus hamabo Siebold & Zucc. & 1841
Description:
Mitochondrial ubiquitin ligase activator of NFKB
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 22457178 | 22461918 | - | nbisL1-mrna-2604 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.71 | 37,875.62 Da | 50.73 | 99.47 | -0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16515 | RING-HC_LRSAM1 | 294 | 333 | 3.41316E-19 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 293 | 336 | 3.6E-13 | - |
| Pfam | PF12483 | E3 Ubiquitin ligase | 87 | 235 | 7.4E-35 | IPR022170 |
| SUPERFAMILY | SSF57850 | RING/U-box | 294 | 336 | 2.07E-7 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 268 | 341 | 9.4E-17 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 295 | 330 | 11.36805 | IPR001841 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G63900.1 | E3 Ubiquitin ligase family protein. | 0 |
| RefSeq | XP_039035823.1 | E3 ubiquitin-protein ligase SP1-like [Hibiscus syriacus] | 0 |
| Q8L7N4 | E3 ubiquitin-protein ligase SP1 OS=Arabidopsis thaliana OX=3702 GN=SP1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6A2XQX2 | RING-type E3 ubiquitin transferase OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00116951pilonHSYRG00855 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg35267, jg35268, jg8830 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_6242 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah029627 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_7g163340 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg35755, Sbi_jg721 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg3939 |
| Amaranthaceae | Suaeda aralocaspica | 3 | GOSA_00001998, GOSA_00019846, GOSA_00019847 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl72148, Sgl75712 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000008113, gene:ENSEOMG00000037648 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7AG0014710, CQ.Regalona.r1.7BG0017040 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30011550 |
| Apiaceae | Apium graveolens | 3 | Ag10G00765, Ag2G02418, Ag2G02419 |
| Arecaceae | Cocos nucifera | 1 | COCNU_02G017080 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_08.3230.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri10G20473 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G59560.1, AT1G63900.2 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10008106m.g.v1.0, Thhalv10024073m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp2g00790.v2.2, Sp5g00470.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB04g023800.2N, BniB06g061250.2N, BniB08g077040.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G2165 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G2277 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno02g00140 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0025s00050.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate01g16890, gene.Thate08g08400 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-2604 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG04.1001 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00024779 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb4G23231, Lb4G26059 |
| Poaceae | Echinochloa crus-galli | 6 | AH01.3576, AH03.3908, BH01.3927, BH03.4197, CH01.4190 ... |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_7AG0579760, gene-QOZ80_7BG0610910 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0118540.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_039185 |
| Poaceae | Oryza coarctata | 2 | Oco13G014360, Oco14G015250 |
| Poaceae | Oryza sativa | 1 | LOC_Os07g45350.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_02G374100, gene-BS78_04G220000 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0305013 |
| Poaceae | Sporobolus alterniflorus | 6 | Chr02G018630, Chr0G021230, Chr19G001120, Chr24G013550 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G281900 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG017220, gene_TRIDC2BG020790 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G138100.2, TraesCS2B02G162000.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb110530_P003, Zm00001eb329440_P006 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-217 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g6980 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG03.743, evm.TU.LG06.1818, evm.TU.LG12.985 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc01g12130, gene.Posoc02g34640 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_5_RagTag.942 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-11398 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-19915, nbisL1-mrna-7708 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-11560 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000006l.274 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00013588 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-10017 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-7563 |
| Salicaceae | Populus euphratica | 1 | populus_peu27167 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132608209 |
| Solanaceae | Solanum chilense | 1 | SOLCI002235400 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107023810 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_6245 |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G0365 |
| Zosteraceae | Zostera marina | 2 | Zosma01g32240.v3.1, Zosma04g26880.v3.1 |